| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_1128 |
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| Symbol | |
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| ID | 4618052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum islandicum DSM 4184 |
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| Kingdom | Archaea |
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| Replicon accession | NC_008701 |
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| Strand | + |
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| Start bp | 1023122 |
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| End bp | 1024108 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639784224 |
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| Product | H/ACA RNA-protein complex component Cbf5p |
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| Protein accession | YP_930642 |
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| Protein GI | 119872635 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative
[TIGR00431] tRNA pseudouridine 55 synthase
[TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.00000787218 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAGTGCG GAAATAGAGA GATCTTTGTA AAAACCCAGG AGTCTACAAA CCCTGAGTGG
GGCAAGCCGC CTTCTAAACG TACGACAGAG GAATATATAA GATACTCGCT GGTTTTAATA
GACAAGCCGA GGGGGCCTAG TAGTCATGAA GTTGCCGCGT GGGTTAAGAA AATTCTCGGC
GTAGAGCGGG CTGGGCACGC CGGCACGCTG GATCCCAAAG TCTCTGGGGT TTTGCCTATT
GCCGTCGCTG AGGGGACTAA GGCCCTGCTT GCTTTATCGC GTTCTGACAA GGTGTATGTA
GCCGTGGCGA AATTCCACGG CGATGTAGAT GAGGAGAAGC TCAAAGCTGT TTTAAACGAG
TTTCAGGGCG TTATATATCA AAAGCCTCCT TTACGTTCCT CTGTAAAAAG ACAGCTTAGA
ACTCGCCACG TGTATTCTCT AGAGCTTCTG GAATTAGACG GCAGATATGC CGTTATAAAA
ATGCATGTAG AAGCGGGGAC ATATGCGAGA AAGTTGATTC ACGACATAGG CGAGGTGTTG
GGCGTGGGAG CTAACATGAG GGAGCTACGC CGTATAGCTG TATCTTGCTA TACTGAAGAC
GAGACTGTGG CTTTACAAGA TGTGGCAGAT GCGTATTACA TATGGAGGAG GTATGGAGAT
GACACATATT TGAGGAGGGT TCTACTTCCA ATTGAAGAAA TTGCGCGTCA CCTCCCTAAG
ATATGGGTTA GAGACAGCGC AGTTGACGCA TTGTGTAACG GAGCGCCTTT GGCAGCTCCT
GGTGTTGTTA AATTTGAAAC GCCGTTTTCG AAAGGCGAGC TTGTGGCGTT TTTTACATTA
AAAGACGAAC TTATAGGGTT TGGCAGAGCG TTGGTTGAAA GTGAGGAGGC TAAAAAAATG
GAGAGGGGGC TTGTCGCGCG TGTAGATAGA GTTATTATGC GGCGGGGGAC GTACCCCCCT
ATGTGGAAGA GAAAACAGCA GACGTAG
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| Protein sequence | MKCGNREIFV KTQESTNPEW GKPPSKRTTE EYIRYSLVLI DKPRGPSSHE VAAWVKKILG
VERAGHAGTL DPKVSGVLPI AVAEGTKALL ALSRSDKVYV AVAKFHGDVD EEKLKAVLNE
FQGVIYQKPP LRSSVKRQLR TRHVYSLELL ELDGRYAVIK MHVEAGTYAR KLIHDIGEVL
GVGANMRELR RIAVSCYTED ETVALQDVAD AYYIWRRYGD DTYLRRVLLP IEEIARHLPK
IWVRDSAVDA LCNGAPLAAP GVVKFETPFS KGELVAFFTL KDELIGFGRA LVESEEAKKM
ERGLVARVDR VIMRRGTYPP MWKRKQQT
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