| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_1089 |
|---|
| Symbol | |
|---|
| ID | 4618195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | + |
|---|
| Start bp | 978639 |
|---|
| End bp | 979421 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 639784184 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_930604 |
|---|
| Protein GI | 119872597 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 77 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTACTAA AAGGAAAGGT CTCTATAGTC ACCGCTGCGA GTAGAGGGAT AGGGCGTGGC
GTTGCGTCTG TACTCGCGAG AGAGGGTTCT GACTTAGTTA TCGCCGCCCG CGACTCAGAG
AAATTAAAAA ATGTAGCCAA CGAGTTGTCG TCTAAATATG GAGTTACTGT GATTCCCGTT
TCTGCAGATT TGACAAATAG AGGAGATGTA AAACGAGTAG TAGAGGAGAC CATCAAGAAC
TTTGGGAAAG TAGACGTATT AGTCTACAAC ACAGGACCGC CTAAGCCGGG GACTTTTCTT
GAACTCACAG AGGAGGACTG GGACTATGGT GTAAAACTAC TATTGATGAG CGCTGTGTGG
ATAACAAGAG ATGTCCTCCC CCATATGATT GAGAGAAGAC AAGGCAGATT AATATATATC
ACATCTAGCA CGCTAAAACA GCCGATTCCA ACGCTCACAC TCTCTAATGT AATTAGAATC
TCTCTAGCAG GTTTGGTAAA AACACTAGCA TATCAGCTAG GCAGATACAA TATCCTCGTC
AACGGCATTA TGCAGGGATA TGTAGACACA GACCGCGTGA GAGAGGTAGC CGCCGCGAGA
GCCCAAAGAG AGGGGCGTAC CGTCGATGAA GTATTAGAAG AAATGGGAAG AGAGATCCCG
CTGGGCAGAT TAGCTAAGCC GGAAGAGATA GGAGAGCTCG TGGCCTTCCT AGCCTCCGAA
AAAGCTAGCT ATATCACAGG CTCTTTAATT TTAATAGACG GGGGACGTAC GTTATGTATA
TAG
|
|---|
| Protein sequence | MLLKGKVSIV TAASRGIGRG VASVLAREGS DLVIAARDSE KLKNVANELS SKYGVTVIPV
SADLTNRGDV KRVVEETIKN FGKVDVLVYN TGPPKPGTFL ELTEEDWDYG VKLLLMSAVW
ITRDVLPHMI ERRQGRLIYI TSSTLKQPIP TLTLSNVIRI SLAGLVKTLA YQLGRYNILV
NGIMQGYVDT DRVREVAAAR AQREGRTVDE VLEEMGREIP LGRLAKPEEI GELVAFLASE
KASYITGSLI LIDGGRTLCI
|
|---|
| |