| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3641 |
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| Symbol | |
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| ID | 4605888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 4290466 |
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| End bp | 4292559 |
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| Gene Length | 2094 bp |
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| Protein Length | 697 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639783066 |
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| Product | TonB-dependent receptor, putative |
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| Protein accession | YP_929513 |
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| Protein GI | 119776773 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000783326 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0764781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACTCA AATTCTCCAC CCTGAGCCTG GCCGTCGTGG CCGCGCTGCA ATCCCCGCTG
GCACTGGCCG ATGACGCATC CCATGGCGAC ATGGAGCGAA TTGAGGTTAG AGGCCGAAGC
TTTAACGAAT ACAAGGTCGG TGCTGCCAAT GGTGCCATGC GTGGCGATAT GTCGTTGCTG
GAGACGCCAC AGTCGGTGAA CGTCATCCCG GATTTCGTGA CCGATGAACA GCTCGCCACC
AACCTGGCTG AAGTGTTGGT GAACGATTCT TCCATCACAG CGGGAACCCA GCGCTGGAAC
CGTCAGGTGT TTTCACTGCG AGGGTTTGAG CTGGACTCAG GCTCTGGTTA TCTGGCCAAC
GGTCATCAGT TGTTTGCCCA CTATGTGCTG CCAATAGAAA TCTTAAGTCA GGTGGAAGTG
CTCAAGGGGC CTTCTTCGAT GCTCTATGGT CAGTCTGGTC CCGGTGGTCT GGTCAACATG
GTCACCAAGA AGCCGACTTT TGATCGCCTG TTCGAACTGG GCTTTGATAC CGATGAAGAA
GGCTCGACCC GTTTCCAGCT GGATGCCGGT GGTGCGCTGA CGGATTCCCT GCGTTACCGG
GCAGTGGCCG TTAAACAAGA CACAGAGTAC TGGCGCAGCT ATTCACCTCT GGCTGGTGAG
TCGGCAGAGC AGCAGGAGCG AGACCGCTGG TTGGGCTTTA TCGCCCTGGA CTATGATATT
TCAGACAACG TGCTGTTGTC GGTACGTTAT GACAGGACTG AAGATAAAGC CGGTATCGAT
GTAGGGGGCT GGCTCGACAA AGATGGGCAT CTTATCGGCA GCCGAGAGCA AATCTGGGAT
ATGCCCTGGG CTTTTACCGA CAACAGCATT ACTAATCTGG GTGCTGATCT GGCCTGGCAG
TTAAGTGACA ACTGGAAGCT GAAGGTTGGT TACAACGACC AGCAGTTCAA TCGGCAGCGC
TTTGATTCGG CCCCGCGTTA CAATACCGAC GCCATGAGTA CTGGCTACCA GATAAGCCCC
TTCGACCGGT TCGACGACTG GAGCCACAAG ACGGCTTATG TGGACTTAAA TGGTGAGTTT
GAGCTGGCGG GGATGGAGCA CAAGCTACTG ATTGGCGCAA ACAAGCTCGA TTATGGCTAT
GCCCAATTAA GAACCTCCGG TGCGCGGCAA AATGTCATGC CCGGTGTTGC GCTGCCCCGT
CCCGACATTT CCTACAAGGA TGACACCAGT TGGTCCACCA GTGGTTATGA GTTCTACGGT
GTCTATCTGC AAGACCTTAT CAGTATCAAC GACCGGTGGA AGGTATTGGC CGGTGTACGT
TTCGATGAGC AAAAGGAAGA CTCCGGCAAC GATAATGCCG TATCACCCAA ATTTGGCCTG
ATCTGGCAGC CGCAGCAGGA CTTGAGCCTG TACGCCAACT ACTCCAGGAG TTTTGTCCCT
CAGGGGAAGA TCAATGATGA AAACGACCTG AGTAATGACA TGGAGCTGGA TCCTGAATTT
GGTACCCAAT ATGAACTGGG TGCCAAATGG GAGCTGATGA ATGGCGGCCT GCTGCTGACC
GGTGCCCTGT TTGATATCGA AATCGATAAC CGCATTGTGG TGCATACCCT GGACGTGCCA
GTGGGCGATA TTACCAAGGT CACCCGTCAG GATGGTATTC AGCATCATAA AGGGATGGAG
CTGGGTGCCC AGGGACAGGT CAGCGACAGC CTGTTTTTGA CCGCATCCAT GATGTATTTG
GATGCTGAGT ACAAAACCGC CGACAGCCTG AATGGTAAGA CGCCAATCGA TGCCCCCGAG
TGGTCAGCTA ATATCTGGAG CCGCTACGAA GTAACGGATA ACTTTGCAGT TAACCTAGGC
GCTGTTTATG TGGGTGAACG TTTTGCCGAT ACCCCAAATA GCATCAGCAA AGATGGTTAT
GTGCGTTTTG ATATGGGCGC GGCTTATACC TTCGATATTG GCGGCAGTGA AATCGGCATT
CGTGCCAACG TACGCAACCT GTTCGATACC GAGTATCTGG ACGGCGGTAA CTACCAGATG
GTCACCCTGG GACAGGGACG CCACTTCAGC CTGGCATTGA ACGCCAAGTT CTAA
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| Protein sequence | MSLKFSTLSL AVVAALQSPL ALADDASHGD MERIEVRGRS FNEYKVGAAN GAMRGDMSLL
ETPQSVNVIP DFVTDEQLAT NLAEVLVNDS SITAGTQRWN RQVFSLRGFE LDSGSGYLAN
GHQLFAHYVL PIEILSQVEV LKGPSSMLYG QSGPGGLVNM VTKKPTFDRL FELGFDTDEE
GSTRFQLDAG GALTDSLRYR AVAVKQDTEY WRSYSPLAGE SAEQQERDRW LGFIALDYDI
SDNVLLSVRY DRTEDKAGID VGGWLDKDGH LIGSREQIWD MPWAFTDNSI TNLGADLAWQ
LSDNWKLKVG YNDQQFNRQR FDSAPRYNTD AMSTGYQISP FDRFDDWSHK TAYVDLNGEF
ELAGMEHKLL IGANKLDYGY AQLRTSGARQ NVMPGVALPR PDISYKDDTS WSTSGYEFYG
VYLQDLISIN DRWKVLAGVR FDEQKEDSGN DNAVSPKFGL IWQPQQDLSL YANYSRSFVP
QGKINDENDL SNDMELDPEF GTQYELGAKW ELMNGGLLLT GALFDIEIDN RIVVHTLDVP
VGDITKVTRQ DGIQHHKGME LGAQGQVSDS LFLTASMMYL DAEYKTADSL NGKTPIDAPE
WSANIWSRYE VTDNFAVNLG AVYVGERFAD TPNSISKDGY VRFDMGAAYT FDIGGSEIGI
RANVRNLFDT EYLDGGNYQM VTLGQGRHFS LALNAKF
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