| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3596 |
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| Symbol | |
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| ID | 4605843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 4228104 |
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| End bp | 4230842 |
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| Gene Length | 2739 bp |
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| Protein Length | 912 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639783017 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_929468 |
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| Protein GI | 119776728 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0612] Predicted Zn-dependent peptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAACCA CTTTCAAGCG GCGCCTGCCA AGCCTGGCCA CCGCCATGGT GCTGGCCCTG
TGCAGCCTCA CCCCCATTCA GGCATTCGCC GACCTCCAAA AAGTCACCGA GGTAGAAGGT
ATCAGCGAAT ATCGCCTCGA CAATGGTCTC AAGGTACTGT TATTCCCCGA CCCCACCAAA
GAAACCGTGA CAGTGAACGT GACTTATAAA GTCGGTTCCA AGCACGAAAA CTACGGTGAG
ACCGGCATGG CCCACCTGCT GGAGCACCTG GTGTTCAAAG GTACCCCCAA GCACAAGGAC
ATTCCGGCAG AACTGAGCTC CCACGGCGCC CGCCCCAATG GCACCACCTG GACAGATCGC
ACCAATTACT TCGAGACCTT CGCTGCTACG GAAGAAAACA TCGACTGGGC CTTGTCGATG
GAATCGGACC GCATGGTCAA TTCCTTTATC GCCAAAAAAG ATCTCGACAG TGAAATGACT
GTGGTACGCA ACGAGTTTGA GCGCGGCGAA AACAGTCCTT TTCGCATCAC ACTGCAACGC
ATGATGGCGT CTGCCTTTGA ATGGCATAAC TATGGCAAAT CCACCATAGG AGCGCGCTCT
GATTTGGAGA ATGTCTCCAT CGAACGTCTG CAGGACTTTT ACCGCAAGTA TTATCAGCCC
GACAACGCCA CCCTGATTGT GGCGGGTAAG TTTGCACCAG AGGACATGCT CAAAAAGATT
GAAGCCACCT TTGGCAACAT CCCCAAGCCA AACCGCACCA TTGAACCACT GTATACAGTC
GAACCGGCAC AGGATGGCGA ACGTCAGGTT ACCGTGCGCC GGGTTGGCGA CGTGCAACTG
CTCGGCACCA TCTACCACGT GCCACCGGGC GCCCATGAAG ACTATGCCGC CATCGATGTG
CTCAATGAAG TACTGTCGGC CACCCCCAAC GGCCGCCTCC ACAAGTCGCT GGTAGAAGCC
AAGCTGGCCT CCTCTGTATT TGGGATGAAC TTCCAATGGC AAGATCCCGG TGTGGCCATT
TTCATGGCCG AGATGGACAA AACGGCCGAC ATGGATGCCA CCCAAAAGGC CCTGCTGGAT
ACGCTGGAGT CCATTCGCAA TACGCCCATT ACCGATAAGG AAGTAGAAAC GGCCAAGCGT
ACCCTGCTGA AAAACCTGAC TCTTGCCTTC AACTCCTCCG AGCGCGTAGC GCTGGAGCTG
TCTGAGTGGC TGGGTATGGG CGACTGGCGT TTGCTGTTTT TAAATCGTGA TCGCCTGGAG
AAGGTCAGTG CCGCTGAAGT ACAGCGGGTG GCTGAATACT ATCTCACCCA GAATAACCGC
ACCCTGGGGC GCTTTATTCC AGCCGAGAAG CCGGCACGGG TAGAGATTCC TCTGGTGGCC
GACGTCGATG CGCTGGTGAA AGACTATAAG GGCCGCGAGC AGGTGGCACA GGGTGAAGCT
TTCGACCCGT CACACACCAA CATCGACAGC CGCACCGAAA CCCTCACGCT GAACTCAGGC
ACCAAGGTGT CTTTGCTGCA AAAAAAGACC CGCGGCGAAT CCGTGGTGGT GAGGATAAGC
GGCCAGTTTG GCGATCTGCG CAGCCTGTCT GGCAAGAATG CCGTTGGCGA TGCCGTGGGT
GAGATGCTGC TGCGCGGCTC AAGCAAGTAC AGCCGCGAGC AAATCAAAGA AGAGCTGGAT
AAGCTGCAGG CGAGCCTGCG CATCGGTGGC AGCAATGGCA ACCTGTTTGC CTCGGTAGAG
ACCACCAGGG CCAACCTGTT GCCGGTGCTC GATATCGTCA CAGACGTGCT GCGAAACCCA
AGCTTCCCTG AAAAAGAGTT TGAGCTGTAC AAGACTGAAA CCAAGGTGGC TATTGAGCAA
AACCTGCAGG ATCCACAGTC GCTGGCCTTC AATGCCTACA GCCGCCACCA GTCGCCCTAT
GGCAAGGACG ACCCGCGTTA CGTGGGCACT TTCGAAGAGC AGTTGGCCGA GCTGGATAAG
CTCACTCTCA AGCAGGTGAA GCGTTACCAC GGCGATTTCT ACAATGCCAA GCAGATGCAG
GTGTCCATTA TCGGTGACTT CGATAAAGAC GCCACAGTCA GCGCCCTGGA CACCCTTACC
AAGGGCTGGA AGAGCAAGCA GACCTATCAG CGTATCGCCT CACCTTATGT GAAGCTCGAT
GCCTCGCCCA TCACCTTCAA CACGCCAGAC AAGGAAAACG CCACCTTTGT GGCCTCCCTC
AGCCTGCCTG TGGGTGACAT GGATGCCGAT GCGCCTGCAC TGACCCTGGG TAACTACATC
CTTGGCGGCG GCTTCCTAAG CTCGCGCCTG GCCACCCGTT TGCGCCAGAA AGATGGCCTG
AGCTATGGCG CCGGTTCTTT CCTGCGCTTA AGCAGCGAAG ATCAGCGTGG CTCCCTGGGT
GCCTACGCCA TCTGCGCGCC ACAAAACCTG GCCAAGGTTG AACTCGGCTT CCGGGAGGAG
ATTGCCAGGC TGCTGAAAGA TGGCTTTACC GCCGACGAAG TGGAAGCCGC CAAGTCTGGC
TTGCTGCAGG GCCGTAAGGT TAGCCGCTCG CAGGACAAAG AGTTGGTAGG AACCCTGGTG
GGCAACCTCA AGCTCGATCG CTCCATGGCC TTTGATGCCG ACTTTGAAGC CAAACTGGCA
GCACTGACGG CAGATGATCT GAACAAGGCC TTCCGCAAAT ACATCAAGGT GGACGATTTC
GCCCTGATCA AAGCGGGCGA CCAAAGCAAG GTCGAGTAA
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| Protein sequence | MQTTFKRRLP SLATAMVLAL CSLTPIQAFA DLQKVTEVEG ISEYRLDNGL KVLLFPDPTK
ETVTVNVTYK VGSKHENYGE TGMAHLLEHL VFKGTPKHKD IPAELSSHGA RPNGTTWTDR
TNYFETFAAT EENIDWALSM ESDRMVNSFI AKKDLDSEMT VVRNEFERGE NSPFRITLQR
MMASAFEWHN YGKSTIGARS DLENVSIERL QDFYRKYYQP DNATLIVAGK FAPEDMLKKI
EATFGNIPKP NRTIEPLYTV EPAQDGERQV TVRRVGDVQL LGTIYHVPPG AHEDYAAIDV
LNEVLSATPN GRLHKSLVEA KLASSVFGMN FQWQDPGVAI FMAEMDKTAD MDATQKALLD
TLESIRNTPI TDKEVETAKR TLLKNLTLAF NSSERVALEL SEWLGMGDWR LLFLNRDRLE
KVSAAEVQRV AEYYLTQNNR TLGRFIPAEK PARVEIPLVA DVDALVKDYK GREQVAQGEA
FDPSHTNIDS RTETLTLNSG TKVSLLQKKT RGESVVVRIS GQFGDLRSLS GKNAVGDAVG
EMLLRGSSKY SREQIKEELD KLQASLRIGG SNGNLFASVE TTRANLLPVL DIVTDVLRNP
SFPEKEFELY KTETKVAIEQ NLQDPQSLAF NAYSRHQSPY GKDDPRYVGT FEEQLAELDK
LTLKQVKRYH GDFYNAKQMQ VSIIGDFDKD ATVSALDTLT KGWKSKQTYQ RIASPYVKLD
ASPITFNTPD KENATFVASL SLPVGDMDAD APALTLGNYI LGGGFLSSRL ATRLRQKDGL
SYGAGSFLRL SSEDQRGSLG AYAICAPQNL AKVELGFREE IARLLKDGFT ADEVEAAKSG
LLQGRKVSRS QDKELVGTLV GNLKLDRSMA FDADFEAKLA ALTADDLNKA FRKYIKVDDF
ALIKAGDQSK VE
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