| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3569 |
|---|
| Symbol | |
|---|
| ID | 4605816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 4203638 |
|---|
| End bp | 4205821 |
|---|
| Gene Length | 2184 bp |
|---|
| Protein Length | 727 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639782990 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_929441 |
|---|
| Protein GI | 119776701 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1944] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00702] uncharacterized domain
[TIGR03549] conserved hypothetical protein TIGR03549 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATCA AAGTTAATTT TCTCGATAAC CTGAGACTGG AAGCCAAGTT CGACGACTTC
ACCGTGGTTG CCGACCAACC CATTCGCTAC AAGGGCGATG GCTCGGCCCC CAGTCCGTTC
GACTACTTCC TGGCTTCCTC CGCCCTGTGT GCCGCCTACT TTGTGAAGGT GTACTGCGTG
TCGCGGGATA TTCCCACCGA AGGTATCCGC CTGTCGCAAA ACAACATTGT TGACCCGGAA
AACCGCTACA ACCAGCAGTT TAAAATTCAG GTTGAACTAC CAGAGAGCAT CAGCGACAAA
GACCGCGAAG GCATTCTGCG CTCCATCGAC CGCTGCACCG TGAAAAAAGT GGTCCAGACC
GGCCCCGAGT TCGTTATCGA AACCGTGGAA AACCTCGACG AAGACGCCCA GGCCATGCTG
ATGGTGACGC CCGATGCCGA CCACAGCACC TTTATTGTGG GGAAAGACCT GCCGCTGGAG
CAGACCATCG CCAATATGAC CGCCAAGCTG GCGGAGCTGG GAATGAAAAT TGAAATCTCC
AGCTGGCGTA ACCTGGTACC CAACGTCTGG TCACTGCATA TCCGTGACGC CGCCTCGCCC
ATGTGCTTTA CCAACGGCAA AGGCGCCACC AAAGAAAGCG CCCTTTGCTC GGCATTGGGT
GAATTTATCG AGCGTCTCAG CTGCAACTTC TTCTATAACG ATCAGTATTT TGGTGAAGAA
ATAGCCAATG CTGAGTTCGT GCATTACCCC AATGAAAAGT GGTTCCCGCT GGAGGAAGAC
GACTCGCTGC CAGCAGGTCT GTTGGACGAG TATTGCCTCG ATATCTACGA CAACGATGGC
GAGCTGTGCG GCTCTCATCT GGTGGACACC AACTCGGGCA ACTATGAGCG CGGCATCTGC
GCCATCCCTT ACATCCGCCA CAGCGATGGC GAGACAGTGT ATTTCCCGTC CAACCTGATT
GAAAACCTAT TCCTCAGCAA CGGCATGAGC GCGGGCAACA ACCTGGCCGA AGCCAAGGTG
CAGTGCCTGT CGGAAATCTT CGAGCGCGCG GTAAAGCGCC AGATCATCGA AGAAGAAATT
GCCCTGCCGG ACGTGCCCAA GGACGTGCTG GCCAAGTACC CTTCCATAGT GGCGGGCATC
GACGCGCTGG AGGCCCAGGG CTTCCCGGTG GTGGTGAAAG ATGCCTCCCT CGGCGGCCAG
TTCCCGGTGA TGTGCGTAAC CTTGATGAAC CCACGCACCG GCGGCGTATT TGCCTCCTTT
GGCGCCCACC CAAGCCTCGA AGTGGCGCTG GAGCGCAGCC TCACAGAGCT GCTGCAGGGC
CGCAGTTTCG AAGGTCTTAA CGACGTGCAA AAGCCCACCT TCAACAGCAT GGCGGTGCAG
GAGCCAGAGA ACTTCGTTGA GCACTTTATC GACTCGACTG GGGTGATCTC CTGGCGCTTC
TTCAGTGCCA AACACGACTA TGAGTTCGTG GAGTGGGATT TCTCCGGCAC CAATGAAGAA
GAATCCACCG CCCTGTTCGG CATCCTCGAA GATCTGGGTC TTGAGGCCTA CATCGCTGAA
TTCACTGCTC TGGGCAGTGC CTGCCGTATT CTGGTGCCCG GTTACTCAGA GGTGTATCCG
GTCACCGACC TGATTTGGGA TAACACCAAT AAGGCGCTGG ATTTCCGTGA AGATATCCTC
AACCTGCATC GCCTGAGTGA CGATGAGCTT GCTGATTTGG TTGAGCGCCT CGAAGAAAGC
GAGCTGGATA ACTACACCGA CATCATCACC CTGATTGGTA TCGAATTTGA TGAAAATACC
GTTTGGGGTC AGCTGACTAT CCTTGAGCTC AAGCTGCTGT GCTACCTGGC GCTGGGCGAG
CTGGAAGCGG CCCAGGAACT GACCGAGACC TTCCTTCAGT ACAACGACAA TACGGTAAAA
CGCGGCCTCT TCTATCAGGC CATGTCAGCG GTGCTGGAAA TCAGCCTGGA TGATGAGCTG
GCGCTGGAAG ACTACCGCCA CAACCTCACC CGCATGTTCG GTGAAGAAAC CATGGACGCC
GTAATCGGCT CGGTGGAAGG TTCGGTGCGT TTCTATGGCC TCACCCCAAC CAGCATGAAA
CTGGAAGGAC TGGACCGTCA TCAGCGCTTG ATTGAAAGCT ATAAGAAGCT GCACGCCGCC
CGCGCCAAAC TGGCGGGGCT GTAA
|
|---|
| Protein sequence | MEIKVNFLDN LRLEAKFDDF TVVADQPIRY KGDGSAPSPF DYFLASSALC AAYFVKVYCV
SRDIPTEGIR LSQNNIVDPE NRYNQQFKIQ VELPESISDK DREGILRSID RCTVKKVVQT
GPEFVIETVE NLDEDAQAML MVTPDADHST FIVGKDLPLE QTIANMTAKL AELGMKIEIS
SWRNLVPNVW SLHIRDAASP MCFTNGKGAT KESALCSALG EFIERLSCNF FYNDQYFGEE
IANAEFVHYP NEKWFPLEED DSLPAGLLDE YCLDIYDNDG ELCGSHLVDT NSGNYERGIC
AIPYIRHSDG ETVYFPSNLI ENLFLSNGMS AGNNLAEAKV QCLSEIFERA VKRQIIEEEI
ALPDVPKDVL AKYPSIVAGI DALEAQGFPV VVKDASLGGQ FPVMCVTLMN PRTGGVFASF
GAHPSLEVAL ERSLTELLQG RSFEGLNDVQ KPTFNSMAVQ EPENFVEHFI DSTGVISWRF
FSAKHDYEFV EWDFSGTNEE ESTALFGILE DLGLEAYIAE FTALGSACRI LVPGYSEVYP
VTDLIWDNTN KALDFREDIL NLHRLSDDEL ADLVERLEES ELDNYTDIIT LIGIEFDENT
VWGQLTILEL KLLCYLALGE LEAAQELTET FLQYNDNTVK RGLFYQAMSA VLEISLDDEL
ALEDYRHNLT RMFGEETMDA VIGSVEGSVR FYGLTPTSMK LEGLDRHQRL IESYKKLHAA
RAKLAGL
|
|---|
| |