| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3484 |
|---|
| Symbol | |
|---|
| ID | 4605731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 4116685 |
|---|
| End bp | 4118280 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639782905 |
|---|
| Product | cytochrome-c oxidase |
|---|
| Protein accession | YP_929356 |
|---|
| Protein GI | 119776616 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.139839 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACCA CGACCCACGA TACCCATCAG GGCGTCCATG ACGAACACCA TCATGGCCCG
GCCAAGGGCA TAATGCGCTG GATATTAACA ACCAATCACA AGGATATAGG CACGCTCTAC
CTCTGGTTCA GTTTTATTAT GTTCCTGACC GGTGGCGCCA TGGCTATGGT GATCCGTGCC
GAGTTGTTCC AGCCCGGCTT ACAACTGGTT GAGCCCAACT TCTTTAACCA GATGACCACG
GTACACGGCC TTATCATGGT GTTTGGTGCC GTCATGCCAG CCTTTACCGG GTTGGCGAAC
TGGCTGATCC CCATGATGAT TGGGGCGCCA GATATGGCAT TGCCCAGAAT GAACAACTGG
AGTTTCTGGA TCCTGCCCTT TGCCTTCCTC ATCTTGCTCA GCTCGCTGTT TATGGAAGGC
GGAGCACCCA ACTTCGGCTG GACTTTTTAC GCTCCTCTGT CCACCACCTA CAGCCCCGAC
AGTACAGCAC TGTTTGTGTT TTCGGTTCAC ATCATGGGGA TTAGCTCCAT CATGGGTGCC
ATCAACGTGA TAGTCACTAT AGTCAACCTG CGCGCTCCCG GTATGACCTG GATGAAACTG
CCGCTGTTTG TCTGGACCTG GCTTATCACC GCATTCCTGC TGATTGCGGT GATGCCGGTG
CTGGCCGGGG TTGTTACCAT GGTGCTCACC GACAAGTACT TCGGCACCAG TTTCTTTGAT
GCCGCTGGCG GCGGTGACCC TGTGATGTTC CAGCATATTT TCTGGTTCTT CGGTCACCCT
GAGGTGTACA TCATGATCCT GCCTTCATTT GGGATCATCT CGGCGATAGT ACCGGCATTC
AGCCGTAAAA AACTCTTCGG CTATGCCTCC ATGGTTTACG CCACGGCCAG CATCGCCATC
CTGTCGTTTC TGGTGTGGGC ACACCATATG TTTACCACTG GGATGCCTGT GTTTGCCGAG
CTCTTCTTTA TGTACTGCAC CATGTTGATT GCAGTGCCCA CGGGGGTGAA GGTGTTTAAC
TGGGTCGCGA CCATGTGGCG TGGTTCAATG ACCTTTGAAA CGCCTATGCT GTTTGCCATT
GCCTTTATCA TCCTCTTTAC CATTGGTGGT TTCTCGGGAT TGATGCTCGC CATCACGCCG
GTGGATTTCC AATACCACGA TACCTACTTT GTGGTGGCAC ATTTCCACTA TGTGCTGGTA
TCCGGTGCCA TTTTCTCGAT TATGGCGGCG GCCTATTACT GGTTACCCAA GTGGACCGGG
CACATGTATG ACGAGAAGCT CGGCAAACTG CACTTCTGGT GTTCGGTGAT TTCGGTGAAC
GTGCTGTTTT TCCCAATGCA CTTTCTTGGC TTGGCGGGTA TGCCAAGGCG AATTCCTGAC
TATGCGATTC AATTCGCCGA TGTAAACCAG ATAGTCTCAA TAGGCGGCTT TGCCTTTGGT
CTGTCGCAGC TCATTTTCCT GGCTGTGGTT ATCAAGTGTA TTCGCGGCGG CGAACCTGCA
ACGGCCAAGC CATGGGAAGG CTCTGAGGGT TTGGAGTGGA CGCTGCCAAG CCCTGCCCCC
TACCACTCGT TCAGCACTCC TCCTGAGGTG AAATAA
|
|---|
| Protein sequence | MTTTTHDTHQ GVHDEHHHGP AKGIMRWILT TNHKDIGTLY LWFSFIMFLT GGAMAMVIRA
ELFQPGLQLV EPNFFNQMTT VHGLIMVFGA VMPAFTGLAN WLIPMMIGAP DMALPRMNNW
SFWILPFAFL ILLSSLFMEG GAPNFGWTFY APLSTTYSPD STALFVFSVH IMGISSIMGA
INVIVTIVNL RAPGMTWMKL PLFVWTWLIT AFLLIAVMPV LAGVVTMVLT DKYFGTSFFD
AAGGGDPVMF QHIFWFFGHP EVYIMILPSF GIISAIVPAF SRKKLFGYAS MVYATASIAI
LSFLVWAHHM FTTGMPVFAE LFFMYCTMLI AVPTGVKVFN WVATMWRGSM TFETPMLFAI
AFIILFTIGG FSGLMLAITP VDFQYHDTYF VVAHFHYVLV SGAIFSIMAA AYYWLPKWTG
HMYDEKLGKL HFWCSVISVN VLFFPMHFLG LAGMPRRIPD YAIQFADVNQ IVSIGGFAFG
LSQLIFLAVV IKCIRGGEPA TAKPWEGSEG LEWTLPSPAP YHSFSTPPEV K
|
|---|
| |