| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3479 |
|---|
| Symbol | |
|---|
| ID | 4606028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 4109766 |
|---|
| End bp | 4111022 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639782900 |
|---|
| Product | aromatic amino acid transport protein |
|---|
| Protein accession | YP_929351 |
|---|
| Protein GI | 119776611 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0814] Amino acid permeases |
|---|
| TIGRFAM ID | [TIGR00837] aromatic amino acid transport protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.598645 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAACC ACATGAATGC CGCCAGGCAT CCGGTCAAAA CTCCATCGCT GCTGGGTGGC
GCCATGATTA TCGCCGGTAC TACGGTGGGA GCAGGAATGT TTTCCCTGCC TGTGGTGGGC
GCCGGCATGT GGTTTGGCTA TTCGCTGCTG CTGATGGTGG CGATTTGGCT GTGCATGTTG
TTGTCGGGAT TACTGCTGCT GGAAACTAAC CTGAGGTTCG AGCCGGGTGC CAGCTTTGAT
ACCCTTACCC GCGACAGCTT GGGACGCTTT GGCCGTATCG TCAACGGGCT CTCCATTGCC
TTCGTGCTCT ATATCCTGAC ATACGCCTAT ATCAGTGGTG GTGGCTCCAT CGTGAATCAC
AGCCTGTCGG GAATGGGCAT CAGCCTGCCA CAAAGTGTGG CTGGGTTGGT GTTTGCTGCG
GTATTGGCGG CCATCGTTAT GATAAGTACC AAAGCGGTGG ACAGAATCAC CACCATTATG
CTGGGTGGCA TGATAATGAC CTTCTTCCTG GCGGTCGGAA ACCTACTGAT TGAGGTGCAG
CCGAGCAATT TATTCTCGCC CGATGGCGAA GCCCGCTTTG CCCCGTTTTT GTGGGCAGCA
ATTCCCTTCG GGCTGGCGAG TTTTGGCTAC CACGGCAACG TGCCTTCTCT GGTGAAATAC
TACGGTAAAA ATCCGTCCGT CATCATTAAG GCGATTTGTA TCGGCACCTT TATCGCACTG
GTGATTTATG TGTGCTGGCT GCTGGCTGCC ATGGGCAATC TGCCGCGCAG TCAGTTCAGT
GATATCATAG CTCAGGGTGG CAACATGGGC GTGTTGGTGT CGGCCCTGTC GGAGGTCATG
GCCAACGACT GGCTCGGCAA AATGCTGACC CTGTTTGCCA ACCTTGCTGT AGCCTCTTCA
TTCCTTGGCG TGACCCTGGG ATTGTTTGAC TATCTGGCAG ACCTCTTTGG TTTTGCCGAT
GACGCTAAAG GGCGTTTTAA GACCGCTGCC GTCACTTTCT TGCCGCCGAC CTTGTTGGGG
CTGCTGTTTC CCGACGGCTT TTTGGTCGCC ATCGGCTTTG CTGCGCTGGC GGCTACCGTT
TGGACCCTGC TTGTACCCGG AGTCATGGCG TTGAAGCTCA GAAAGCAGCA ACCGGACTAC
CCCGGTTTCA GGGTGCCAGG TGGCGCTGGT GTTATCTATC TGGTGATAAG TTTCGGTATT
CTGACGGCAG CTTGCCATCT GCTCGCAATG GCTGAGCTGT TACCTGTATA CCGTTAA
|
|---|
| Protein sequence | MANHMNAARH PVKTPSLLGG AMIIAGTTVG AGMFSLPVVG AGMWFGYSLL LMVAIWLCML
LSGLLLLETN LRFEPGASFD TLTRDSLGRF GRIVNGLSIA FVLYILTYAY ISGGGSIVNH
SLSGMGISLP QSVAGLVFAA VLAAIVMIST KAVDRITTIM LGGMIMTFFL AVGNLLIEVQ
PSNLFSPDGE ARFAPFLWAA IPFGLASFGY HGNVPSLVKY YGKNPSVIIK AICIGTFIAL
VIYVCWLLAA MGNLPRSQFS DIIAQGGNMG VLVSALSEVM ANDWLGKMLT LFANLAVASS
FLGVTLGLFD YLADLFGFAD DAKGRFKTAA VTFLPPTLLG LLFPDGFLVA IGFAALAATV
WTLLVPGVMA LKLRKQQPDY PGFRVPGGAG VIYLVISFGI LTAACHLLAM AELLPVYR
|
|---|
| |