| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3465 |
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| Symbol | |
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| ID | 4605712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 4095007 |
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| End bp | 4095864 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639782885 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_929337 |
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| Protein GI | 119776597 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.36661 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGGAC AAACGCAATC AATGGCACTG ATGGTCCCCC AGGGAGCCAG TAGTCTTGAA
GCTTATATTC ACTCGGTCAA CAGCATGCCC ATGCTGGAGG CGGAGCAGGA GTATCAGCTC
GCCAAGCGTT TGCAGGAAAC CGGTGACCTG CAGGCAGCAA AGCAGCTGAT TATGTCCCAC
CTGCGCTTTG TGGTTCATGT GGCCAAGAGC TACTCAGGCT ATGGCCTGCC ACAGGCCGAC
CTGATCCAGG AAGGCAACAT AGGCCTGATG AAGGCCGTTA AACGTTTCGA CCCTGATGTG
GGTGTGCGTT TGGTGTCTTT TGCCGTGCAT TGGATCAAAG CAGAAATTCA CGAATATGTG
CTGAAAAACT GGCGCATTGT TAAAGTGGCC ACCACCAAGG CCCAGCGCAA GCTGTTCTTT
AATCTGCGTA AAGCCAAACA GCGTCTGGGT TGGTTCTCGG ATGACGAAGT GGCCATGGTG
GCAGAAAACC TGGGTGTGTC CAAAGACGAT GTGACCGAGA TGGAGTCGCG TATGGCGGCT
CAGGATCAAG CCTTCGATTT GGTCAACGAT CACGACGACG ATGAAGGCTT TGCTCCAGTG
CACTATCTGG AAGACCACTC TTCCGATTTG GCCGCCAACA TCGAAAACGA CAATTGGGAA
TCCAATGCCC AGAATCGTTT GATTGCTGCC ATTAAGACTC TCGATGAGCG CAGCCAGCAC
ATTCTGCGTG CCCGCTGGTT GGATGACGAC AAGGTCACTC TCCAGGAGCT GGCGGAGCAG
TATCAGGTGT CAGCTGAGCG TATTCGTCAG CTTGAAAAGA ACGCCATGAA CAAGCTCAAG
GCGCGTATGG AAGCCTGA
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| Protein sequence | MTGQTQSMAL MVPQGASSLE AYIHSVNSMP MLEAEQEYQL AKRLQETGDL QAAKQLIMSH
LRFVVHVAKS YSGYGLPQAD LIQEGNIGLM KAVKRFDPDV GVRLVSFAVH WIKAEIHEYV
LKNWRIVKVA TTKAQRKLFF NLRKAKQRLG WFSDDEVAMV AENLGVSKDD VTEMESRMAA
QDQAFDLVND HDDDEGFAPV HYLEDHSSDL AANIENDNWE SNAQNRLIAA IKTLDERSQH
ILRARWLDDD KVTLQELAEQ YQVSAERIRQ LEKNAMNKLK ARMEA
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