| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3413 |
|---|
| Symbol | |
|---|
| ID | 4605660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 4039063 |
|---|
| End bp | 4040133 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639782833 |
|---|
| Product | putative iron-regulated membrane protein |
|---|
| Protein accession | YP_929285 |
|---|
| Protein GI | 119776545 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.715022 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAGAT TACTGTGGAA ATGGCACGGA TTGGCAGGGC TGATTACCGC CCTGCCGCTC
TTTGTTATCG CACTGACGGG CAGCTTGCTG GTGTTTAAGG CAGAGCTCGA CAGTCTGTTA
ATGCCAGAGG TGGTTAACGC CAGCACCGGG CCGCGCCTGA CGATGAATCA ATTGGTGGCC
AGTGCCAATC AGCAGCTGTC TGACAGTGAG ATCCTTGGCT GGCAATTTGG CCAGAGCGGT
GAAGCGGATA CCCTGTTTGT GGCCGCCATG GGCAGCTACG ATTGGCAAAA GGTGTGGCTC
GACCCTGCCA GCGGTTCGCT GCTGACACCG CCGGTATCCC TCACCTGGGC CATCACCGAC
TGGCTGCTGG ATCTGCACTA CATGTTGCTG CTGGATCACG CCGGTTTATT GATTGCCGGC
ATCATGGCCT TGCTGTTTTT GTTTCTCGGC ATTTCCGGCA TAGTGCTGCA CCGGCAGTTC
TGGCGAACCT TCTTCACCCT GCGCTGGCGT AAGGGATTGC GCCTGTTGCT GAGCGATACC
CACAAGCTGC TGGGTATTGT GGGGGCGCCG GTATTTTTAG TGCTCGGTTT TACCGGCGCC
TGGTGGAATC TGGAACACTT CTACGAGGAG GAGCTTTCGG GCCACGACGA CAGTCAGTAC
ATCATTAGCC AAAGCTACTA CAGTCCGGCG CTGGATTTTG ATGCGCTGCT GGCCGACACC
CGCCGCCAAC TGCCCACGTT CGTGCCAACG TATCTGCGTT TGCCCGACGC CAGTTATCCC
GGGGTGCATT TCTTTGGCTA TCGGGAGGAT GGTGGCGTGC TGCGAAGCCG CTTCGGCTCA
ATTGTCAGCT ATCACGATCA ATCGGGGGTA CACACCAGCA CTCTGGATGT GGCCGGGGCG
CCTGCCCTGT ACCAGTTCAC CGACAGTTTC AGACCGCTGC ATTATGGTGA TTTCGGTGGC
CTCACAACCC GTATTCTCTG GTGCATCATC GGCTTCTTTC CCTGCCTGAT GGCGCTCTCC
GGGTTCTGGA TGTGGCGCCA GCGCAGTGCT CGAAAAGTGC CGAGGCGCTG A
|
|---|
| Protein sequence | MRRLLWKWHG LAGLITALPL FVIALTGSLL VFKAELDSLL MPEVVNASTG PRLTMNQLVA
SANQQLSDSE ILGWQFGQSG EADTLFVAAM GSYDWQKVWL DPASGSLLTP PVSLTWAITD
WLLDLHYMLL LDHAGLLIAG IMALLFLFLG ISGIVLHRQF WRTFFTLRWR KGLRLLLSDT
HKLLGIVGAP VFLVLGFTGA WWNLEHFYEE ELSGHDDSQY IISQSYYSPA LDFDALLADT
RRQLPTFVPT YLRLPDASYP GVHFFGYRED GGVLRSRFGS IVSYHDQSGV HTSTLDVAGA
PALYQFTDSF RPLHYGDFGG LTTRILWCII GFFPCLMALS GFWMWRQRSA RKVPRR
|
|---|
| |