| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3337 |
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| Symbol | |
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| ID | 4605584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3965553 |
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| End bp | 3966968 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639782757 |
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| Product | homospermidine synthase |
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| Protein accession | YP_929209 |
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| Protein GI | 119776469 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG5310] Homospermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGAGC CAATCAAGTA CGTCAAAGCC CCGGGCCGCA TCCTGATAGT CGGCTTTGGC
AGCATAGGTC AGGGACTGCT GCCGCTTATC CTGCGCCACA TCGATATCAC ACCCCAAAAA
ATCTGCATCA TTACCGCCGA CGACAGAGGC CGCGAAGAGG CCGGGAAACT GGGTATTCGT
TTTATCGAGA TGCCCCTGAC CCGCAAGAAT TACCAGAGTG AACTCACACC GCTGGTGGGC
AAGGATGACT TTTTGGTGAA TCTGTCGGTG GACGTGTCCT CCATCGCCCT GGTTGAGTTT
TGTCAGGCCC GTGGCGCCCG TTATCTGGAT ACCTGTATCG AGCCCTGGGC GGGCGGTTAC
ACCGACCCCA GCAAGTCTTT TGCCGCCCGC TCCAACTATG CCCTGCGTGA GCGGGTGCTG
GCGCTGAAAG ACAAATACCG CGGCGGCCCC ACTGCCGTGG TGGCTCAGGG GGCCAATCCG
GGCATGGTGT CCCATCTGGT GAAACAGGCG CTGATGAACC TGCAGCAGGA TATTCTCGGT
ACCCAGAGTG AACCCAAAAG CCGCGAGGAG TGGGCCAAAC TCGCCCACGA CCTCAACATC
GAGGTCATTC ACATCGCTGA GCGCGACACC CAGGTGGCCA ATCAGGCCAA GGCCATGGAT
GAGTTTGTGA ATACCTGGTC CTGCGATGGC TTTGTCAGCG AAGGCGCTCA GCCAGCCGAA
CTGGGTTGGG GTACCCACGA GAAACACTTC CCCCGTGATG CTGGTCGCCA CGAGGAAGGC
TGCGGCGCGG CCATTTACTT AAAATGCCCC GGCGCCACGG TCAAGGTGCG CACCTGGACC
CCTAACTACG GTCATTTTCA CGGCTTTTTG ATCACCCATA ACGAAGCCAT CTCCATCGCC
GATTTCTTTA CCCTCAAGCA AGAGGGCAAG TTGGTGTATC GGCCCACCTG CCATTATGCC
TACCACCCCT GCGACGATGC AGTGATGTCG CTGCATGAGT TCAACGGCAA AAACTTCCAG
ATGCAGTCGC GCCAGCGGCT GATGCGGGAC GAGATTGTCA GCGGCATCGA CGAGCTGGGG
GTGCTGCTGG CAGGTCATAA GAAGAATGCC TACTGGTATG GCTCGCAGCT GTCTATTGAT
GAGGCGAGGG CCCTGGTTCC CTTTAATGGT GCCACCAGTC TGCAGGTCAC CTCGGCGGCG
CTGGCGGGCA TTGTCTGGGC GCTGGAAAAC CCCAATGCCG GGGTGGTGGA GTCGGACGAG
ATGGATTATC GCCGCAATCT TGAGATCATG GCGCCTTATC TTGGTCCTGT GGTGGGGGAG
TACACCGACT GGACACCGCT CTATCAGCGT GGCGAACTGT TTCCGGAAGA TGTGGATGAC
GACTACGCCT GGCAATTCAA AAACGTGCGG GTGTAG
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| Protein sequence | MTEPIKYVKA PGRILIVGFG SIGQGLLPLI LRHIDITPQK ICIITADDRG REEAGKLGIR
FIEMPLTRKN YQSELTPLVG KDDFLVNLSV DVSSIALVEF CQARGARYLD TCIEPWAGGY
TDPSKSFAAR SNYALRERVL ALKDKYRGGP TAVVAQGANP GMVSHLVKQA LMNLQQDILG
TQSEPKSREE WAKLAHDLNI EVIHIAERDT QVANQAKAMD EFVNTWSCDG FVSEGAQPAE
LGWGTHEKHF PRDAGRHEEG CGAAIYLKCP GATVKVRTWT PNYGHFHGFL ITHNEAISIA
DFFTLKQEGK LVYRPTCHYA YHPCDDAVMS LHEFNGKNFQ MQSRQRLMRD EIVSGIDELG
VLLAGHKKNA YWYGSQLSID EARALVPFNG ATSLQVTSAA LAGIVWALEN PNAGVVESDE
MDYRRNLEIM APYLGPVVGE YTDWTPLYQR GELFPEDVDD DYAWQFKNVR V
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