| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3278 |
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| Symbol | |
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| ID | 4605525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3893120 |
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| End bp | 3894715 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639782698 |
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| Product | threonine dehydratase |
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| Protein accession | YP_929150 |
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| Protein GI | 119776410 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGATT TTTCTGGCTG TGGTGACAGA GATAAATCAG AGGTGAAGCC TGTGGATCTT
GCTCATTATT ATTTGCAAAA AATCCTGCTG TCGTCTGTGT ATGACGTGGC CAAGGTGACG
CCCCTGTCCC ATATGGGCAA GCTGTCGGCG CGCCTGGGGC AGGAGATTTA TTTAAAGCGT
GAAGACATGC AGCCGGTGCA TTCCTTTAAG CTGCGTGGCG CCTATAACCG CATTTCGCAG
CTGACTCAGC CTGAGTGCGA GCGCGGTGTG GTATGCGCTT CGGCGGGTAA CCATGCTCAG
GGCGTTGCGT TGTCGGCCTC AAGCCGTGGC ATTGATGCAG TGATAGTCAT GCCCACCACC
ACGCCGGATA TCAAAATCGA TGCGGTGCGT CGTCGTGGCG GCAATGTGCT CTTGCACGGT
GAGTCCTTCG ATCAGGCCAA CGCCCACGCT CAGCATCTGG CGCAAACCGA GGGCCGGGTC
TATATCGCGC CTTTCGATGA TGAGGCTGTG ATTGCCGGGC AGGGCACAGT GGCGCAGGAA
ATGCTGCAGC AGCAGCGGGA TCTGGAGCTG GTATTTGTGC CCGTGGGCGG TGGTGGCCTG
GTGGCCGGCA TCGCTGCCTA TTACAAGGCG GTGCGACCTT CGGTGAAAAT CATCGGGGTC
GAGCCTGAGG ATGCCGCTTG CCTTAAGGCC GCCATGGCCG CGGGTGAACC TGTGACTTTA
TCCCAGGTGG GCCTCTTTGC CGATGGCGTA GCGGTAAAGC GCATCGGCGC TGAGCCATTT
CGTATCGCCA AACACTATGT GGATGAAGTG GTGACCGTCA GCTCAGACGA AATCTGCGCC
GCGGTGAAGG ATATCTTCGA AGACACCCGT GCCATTGCTG AGCCGGCGGG CGCGCTGTCT
CTGGCGGGGC TGAAAAAGTA TCTGGCGCAG ACAACACCTG CTCTTGCTGA GGCGGGCAAA
CCAGCCCGCA AGGTGGCGGC CATTTTGAGT GGCGCCAACG TGAATTTTCA TAGCCTGAGA
TACGTGTCTG AGCGCTGCGA ACTGGGTGAG CAAAAGGAAG CTGTGCTGGC GGTGAAGGTG
CCGGAAGTGC CCGGTAGCTT TCTTAAGTTT TGCGAGCTTT TGGGCAAGCG CGCCATGACT
GAATTCAACT ACCGCTTCTC GGGCCGCGAC AGCGCCGTGG TGTTTGCCGG TATCCGGCTC
TCCGGTGGCC AGTCGGAGCT TAAAGAGATC ATCGCGTCCC TCACTTCAGG CGGCTTTGAA
GTGCAGGATT TATCGAGCGA TGAAACCGCC AAACTGCATG TGCGTTATAT GGTGGGAGGT
CACCCCACAG AGCCCTTGAG TGAGCGGTTA TTCAGCTTCG AGTTTCCCGA GTATCCGGGG
GCACTGCTTA AGTTTTTAAC CACCCTCGGC AGCCGCTGGA ACATCAGTTT GTTCCACTAC
CGCAACCACG GCGCTGCCTT TGGTCGGGTT CTGGCGGGAT TCGAGGTGCC GGAGGGCGAC
AACGAGGCTT TTGGCCGCTT CCTCACCGAG CTTGGCTTTG TGTGGCAGGA AGAAACCCAC
AGCCCGGCTT ACCGCTTGTT TTTGGGCAGT AAATAG
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| Protein sequence | MLDFSGCGDR DKSEVKPVDL AHYYLQKILL SSVYDVAKVT PLSHMGKLSA RLGQEIYLKR
EDMQPVHSFK LRGAYNRISQ LTQPECERGV VCASAGNHAQ GVALSASSRG IDAVIVMPTT
TPDIKIDAVR RRGGNVLLHG ESFDQANAHA QHLAQTEGRV YIAPFDDEAV IAGQGTVAQE
MLQQQRDLEL VFVPVGGGGL VAGIAAYYKA VRPSVKIIGV EPEDAACLKA AMAAGEPVTL
SQVGLFADGV AVKRIGAEPF RIAKHYVDEV VTVSSDEICA AVKDIFEDTR AIAEPAGALS
LAGLKKYLAQ TTPALAEAGK PARKVAAILS GANVNFHSLR YVSERCELGE QKEAVLAVKV
PEVPGSFLKF CELLGKRAMT EFNYRFSGRD SAVVFAGIRL SGGQSELKEI IASLTSGGFE
VQDLSSDETA KLHVRYMVGG HPTEPLSERL FSFEFPEYPG ALLKFLTTLG SRWNISLFHY
RNHGAAFGRV LAGFEVPEGD NEAFGRFLTE LGFVWQEETH SPAYRLFLGS K
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