| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3268 |
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| Symbol | |
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| ID | 4605515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3880395 |
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| End bp | 3881513 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639782688 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_929140 |
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| Protein GI | 119776400 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGT GGATTCTGGT CATGCTGACC ATAGCGCTGG TGACTCTGGG GAGTGTCATC
GGCTTTAATC TGTTTGTAAA AGGCAAAATT GCCGAGGCCA TCGCCAATAT GCCGGAAGCC
GAGTTTCCGG TCACGGCGCT GGCAGTGAGC CCCACAAAGT GGCAGCCCAC CATCGATGCC
ATCGGCTTTG TCGAGCCACA TCAGGGGGTC ACCATCGCCA ACGAAGCAGC GGGCGTGGTG
ACCAATATCG CCTTCGAAAA CGGCAGCAAT ATCAGCAAAG ACCAATTGCT GGTTGCCCTG
GATACCCGGG TTGAAAAAGC AAATCTACAG GCCAAGCTGG TGCAGCTGCC AGCCTCCGAA
GCCGACTTCA AACGCTTAAC GCGTCTGTAC GCACAAAAAT CCGTATCAAA ACAGGATTTG
GACAACGCCG AGGCCAAGTA TCTGGCGCTG AAGGCCGATA TCGAAAGCCT GGAAGCCACC
ATAGGTCGTC GCGAAATCCG CGCACCCTTC TCTGGTCTGG TGGGTATCCG CAACATCAAC
CTCGGTGAAT ATCTCCAGGT GGGCAGTGAC ATAGTGCGTC TTGAAGACAT CAGCACCATG
AAAATCCGTT TCACCATTCC ACAAACCCAG CTACCCAGAG TGGCAGTGGG ACAAAAAATT
CATGTGTATG TGGATGCCTA TCCTGAAGAA GCCTTTGAAG GGGAAATCGC CGCCATCGAG
CCTGCAGTCT TTTATCAAAG CGGACTGATT CAGATCCAGG CCAGGATCCC CAACGATCAT
GCTCGCCTCA GAAGCGGTAT GTTCGCCCGG GTCAGCGTTC TCCTCGATAA GCTCGAGCAA
CAAATCGTGC TGCCACAAAC AGCCATTAAC TTCACGCTCT ATGGCAACTC GGTTTATCTC
GTTGAGAAGC ATGATGAAAA CGGACAGGCT GTTTTAAGAG TTCGCCAAAT CAATGTGAAT
GTACTCGAGC GCAGTGGCAA CGATGCCTTA GTCACAGGCC CATTGAAGCC GGGCGATCTG
GTAGTCACAT CCGGGCAGAT CCGCCTGTCC AACAACAGCA AGGTCAGCGT GGTGGAAGAC
AAGGCCATGA CCGACGCCGC CAACATGCCC AAGCTCTAA
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| Protein sequence | MKKWILVMLT IALVTLGSVI GFNLFVKGKI AEAIANMPEA EFPVTALAVS PTKWQPTIDA
IGFVEPHQGV TIANEAAGVV TNIAFENGSN ISKDQLLVAL DTRVEKANLQ AKLVQLPASE
ADFKRLTRLY AQKSVSKQDL DNAEAKYLAL KADIESLEAT IGRREIRAPF SGLVGIRNIN
LGEYLQVGSD IVRLEDISTM KIRFTIPQTQ LPRVAVGQKI HVYVDAYPEE AFEGEIAAIE
PAVFYQSGLI QIQARIPNDH ARLRSGMFAR VSVLLDKLEQ QIVLPQTAIN FTLYGNSVYL
VEKHDENGQA VLRVRQINVN VLERSGNDAL VTGPLKPGDL VVTSGQIRLS NNSKVSVVED
KAMTDAANMP KL
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