| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3265 |
|---|
| Symbol | |
|---|
| ID | 4606026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3875054 |
|---|
| End bp | 3877642 |
|---|
| Gene Length | 2589 bp |
|---|
| Protein Length | 862 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639782685 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_929137 |
|---|
| Protein GI | 119776397 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00136665 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAGGG ATACTGGATT TAAGGACGAA GCCAATTCCC CGTCAGGGGG AAGCATTGAG
CGGTTATTGA AGCGGGTTGA CAGGCTCAGA CGGCTTGCCG GCAAGTATAA ACGTGCCGAA
ATCATCAGAG ACGCACTCTT ACAAATTACT CACATCGCCA CCGAAGTGAA TTCTCCGGAA
GACTTCTATG CTGGCGTGCA CCTGCATCTC AAATCCCTGA TCGCCGCAGA TAATTTTTTT
ATTGCCACCT ATAACCACCG TACCGAGCGT CTGGAAATCC CGTTCTTTGC CGATGAAATG
GATCCACATC CGGCCCAGAT GTACCCAGAT AGAGACATAC ACAGCATATT GATGCGGGGT
ATCACGGGTT ATGTATTTCG CTGCGGCGAA ACCATGCTGT GCAACGAAGC CGATTTTGAA
CGTCTGGTCG CCGAGGAAGC CATTGAGAAT TTAGGCAGTG CCAGCCACCA GTGGCTGGGA
GTGCCCATCC GTTATCAGGA GCGAACGACC GGCGTTTTAG TGGTGCAAAC CTACGATCCC
AACGTGAATT ACGGCCTAAC GGAAATAGAG CTGATGGAAT TTATCAGCCA CCATATTTCC
GGGGTAATGG AGCGCCTACG TCATCAGGAG CAGCTAGAAC AATCCATCGA CCAGCGGACT
AAGGAACTCA GCGAAGCCTA CGACAAGCTG AAACTCGAAG TCTATGAAAG ACGCCGAGCC
GAGCGACTGC AAAAATCCCT GTTTGAAATT GCTGAATTGT CGGCATCGGG GCTGGAGCAG
GAAGACTTCT ACAGTCGACT GCACAACATT CTCAGCCACC TGATCCCCGC CAGTAACTGC
TATATCGCGC TGCTGGACGA TACCAATCAG CAGCTGCATT TTCCCTTTTA TGTTTCGCAG
CTTGGCACGG AGCCCCCCAG CCGTCGTCCC CTAACCGATG GGCTGACTGA ATACCTGCTC
AGCAGACGCC GCCCGCTGCT GCTGGATCAA AAAGACATCC AGGATCTGGT CAAAAAGGGG
GAGATTTATG TCAACACCCC CAATCTCAAC AATACGCAAA AGATGCACCA ATGGATTGGC
GTTCCACTCT TTATTGGAGA CGAAGTTCGC GGCGCCCTGA CCATTTACAG CCTCAGCATG
ACCCAGAACT ATCAGATCCG CGATTTGGAA CTGTTGACCT TCGTGTCACA GCACATAGGC
ACGGCTATCG AGCGCAAACA GCATGCTGAG TTTATGAAAA AGAGCTACGA GCGGCTCGAA
TCCAAAGTCG CTGAACGCAC CCGCGAGCTG GAGCTGGAAA TTCAGCGCCG CCGGGAAGTG
GAACAAAAGC TTATTCACGA CGCCAAACAC GATGCGCTGA CAGGCCTGCC CAACCGCAGC
ATGTTCACCG AACGCCTCGG TCAGGCAGTG CGGCATGTCA GACGCCATGG CCGCGACCAA
TTCGCGCTGC TCTTCATCGA CCTGGACAGA TTCAAGCAAA TCAACGATAC CCTGGGGCAC
TTGGAAGGCG ATCGTTTTTT GATAGAAACG GCCCGCCGCC TGTCCCATTG CATTCGCGAA
AACGACACCC TTGGCAGATT GGGCGGAGAT GAATTTGTCG TGCTGCTCGA CCAAATCAAT
ACCCCCAAAG ACGCCGAAGA AGTCGCAGAG CGCATCCTGT CTCAGCTATC AGAGCCTTTC
CAATTGGGTG ATGCCCTATT CCAGTCCGGC GCCAGTATTG GTATTGCGAT CAGCGGACGC
AGTCAGCAGG ATACGCCCGA GTCCATGCTG AGAGATGCTG ACGCCGCCAT GTATCAGGCC
AAGTCCCGGG GCAAGGGATG CTATGTGGTT TACGACAGCA AACGCCGCGA GGAACATCAG
GCCGAGCTAC ATGATGAGGC ATTACTGCGG GACGCATTGG CCCGGGACGA GTTGTATCTC
AAAATCCTGC CGGTGGAGTC ACTCTCCACG GGGGAACCTC TGGCCTACCG TTTAAGCCTT
GGCTGGCGTC CCTCAAAAGG AGGCGAGCTG GCGGAAGACA CTATTCTATC TATTGCCGAA
CGCTCCAATC TTATCCTCGA GCTGGACCGC TGTTTGCTGA GACACCTCAA GCGTCCACTT
CCCCTCGAGC TCAACGATGC CGAACTGCAT TTGTGTTTAT CCAGCGCCCA TCTCAAGCAC
AAACATGCCC TGAGAGGCCT GAAAAACATG GTCAGAGAGC TGAATCTGGA TCCCGCAAAG
CTGTGGCTAT TTTTCGATGA ACGAGCCTTG GTGCAAGACA CTCAAGGGCA CATTGCAGGC
TTCGAGGCAC TGGGAAAACT GGGGGTGAGT TTCGGGCTAT CGGGCTATGG CAATGGCTAC
AGCTCACTGA AATCCCTCAC TCTCATGCCC ATCAAGGCGC TACGGTTGGC GCCCACCACA
GACAGACTTG GCTCGGAAAA AGTGCGCTTA CTTACCGCCT CGGCCATGGC AGCGTCTTCA
TTGGGATTAA CCGTCATCGC CTCAGGCACC GAATGTAGCC TCACCCGCCA GAGTTTGGTG
CAGGCAGGTA TCGATCACAT TCAACAATTG CAGCCACTAC ATCAGGCGCA GAGCAGCGTC
TGCGCCTGA
|
|---|
| Protein sequence | MFRDTGFKDE ANSPSGGSIE RLLKRVDRLR RLAGKYKRAE IIRDALLQIT HIATEVNSPE
DFYAGVHLHL KSLIAADNFF IATYNHRTER LEIPFFADEM DPHPAQMYPD RDIHSILMRG
ITGYVFRCGE TMLCNEADFE RLVAEEAIEN LGSASHQWLG VPIRYQERTT GVLVVQTYDP
NVNYGLTEIE LMEFISHHIS GVMERLRHQE QLEQSIDQRT KELSEAYDKL KLEVYERRRA
ERLQKSLFEI AELSASGLEQ EDFYSRLHNI LSHLIPASNC YIALLDDTNQ QLHFPFYVSQ
LGTEPPSRRP LTDGLTEYLL SRRRPLLLDQ KDIQDLVKKG EIYVNTPNLN NTQKMHQWIG
VPLFIGDEVR GALTIYSLSM TQNYQIRDLE LLTFVSQHIG TAIERKQHAE FMKKSYERLE
SKVAERTREL ELEIQRRREV EQKLIHDAKH DALTGLPNRS MFTERLGQAV RHVRRHGRDQ
FALLFIDLDR FKQINDTLGH LEGDRFLIET ARRLSHCIRE NDTLGRLGGD EFVVLLDQIN
TPKDAEEVAE RILSQLSEPF QLGDALFQSG ASIGIAISGR SQQDTPESML RDADAAMYQA
KSRGKGCYVV YDSKRREEHQ AELHDEALLR DALARDELYL KILPVESLST GEPLAYRLSL
GWRPSKGGEL AEDTILSIAE RSNLILELDR CLLRHLKRPL PLELNDAELH LCLSSAHLKH
KHALRGLKNM VRELNLDPAK LWLFFDERAL VQDTQGHIAG FEALGKLGVS FGLSGYGNGY
SSLKSLTLMP IKALRLAPTT DRLGSEKVRL LTASAMAASS LGLTVIASGT ECSLTRQSLV
QAGIDHIQQL QPLHQAQSSV CA
|
|---|
| |