| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3254 |
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| Symbol | hemC |
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| ID | 4605501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3848789 |
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| End bp | 3849769 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639782670 |
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| Product | porphobilinogen deaminase |
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| Protein accession | YP_929126 |
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| Protein GI | 119776386 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0181] Porphobilinogen deaminase |
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| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.290134 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTAGCAT TGGCGCAACT AACGCAGACC ATAAGATGGA AAATCGGCAT GTCTCAAAAC
CTTATTCGTA TCGCGACCCG CAAAAGCCCC CTTGCCATGT GGCAGGCTGA GTTTGTTAAA
GCAGAGCTCG AGCGCATTCA TCCGGATTTG ACCGTGGAAC TGCTGCCCAT GAGCACCAAG
GGCGACGTTA TTCTGGATAC GCCTCTGGCC AAAGTGGGTG GTAAAGGCCT GTTCGTGAAA
GAACTGGAAG TTGCCATGCT GGAAGGCCGT GCCGACATTG CCGTGCACTC CATGAAAGAC
GTGCCAGTGG ATTTTCCGGA AGGCCTGGGT CTGGAAGTGA TTTGTGAACG CGAAGACCCA
CGTGATGCTT TTGTGTCCAA CACTTACAAG AGTATTGATG AGCTGCCACA GGGCGCCGTA
GTCGGCACCT CCAGCCTGCG TCGACAGTGT CAACTGCGCG CCCGTCGTCC CGACCTGATA
ATCAAAGACC TGCGCGGTAA CGTTGGCACC CGTTTGGCCA AACTCGACTC AGGCGAATAC
GATGCCATCA TCCTCGCCGC GGCGGGTCTT ATCCGCCTTA AACTTGCCGA GCGTATCGCA
GGTTTTATCA GCACCGAAGA ATCACTGCCC GCCAATGGAC AGGGCGCTGT AGGCATTGAA
TGCCGTACCA ATGATGAGCG TGTCAAAGCC TTACTGGCAC CACTGGAGCA CAAAGAAACC
CGCCTGCGGG TGCTTGCCGA ACGAGCCATG AATACCCGTC TGGAAGGGGG CTGTCAGGTG
CCTATTGGTG CCTTTGCCGA AATCGAAGCC GACACCCTGA CACTGCGTGG TTTGGTGGGT
AACCCCGATG GCAGCGAAGT GATCACCGGC TCTGTGACAG GTTCAACTGC TGATGCCATT
GCATTGGGTC ATCAACTGGC GGACGACCTG CTCAGTCGTG GTGCAAAAAC CATTCTGGAT
GCGGTCTACG CCCGGAACTG A
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| Protein sequence | MLALAQLTQT IRWKIGMSQN LIRIATRKSP LAMWQAEFVK AELERIHPDL TVELLPMSTK
GDVILDTPLA KVGGKGLFVK ELEVAMLEGR ADIAVHSMKD VPVDFPEGLG LEVICEREDP
RDAFVSNTYK SIDELPQGAV VGTSSLRRQC QLRARRPDLI IKDLRGNVGT RLAKLDSGEY
DAIILAAAGL IRLKLAERIA GFISTEESLP ANGQGAVGIE CRTNDERVKA LLAPLEHKET
RLRVLAERAM NTRLEGGCQV PIGAFAEIEA DTLTLRGLVG NPDGSEVITG SVTGSTADAI
ALGHQLADDL LSRGAKTILD AVYARN
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