| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3249 |
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| Symbol | dapF |
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| ID | 4605496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3843457 |
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| End bp | 3844284 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639782665 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_929121 |
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| Protein GI | 119776381 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATCCACT TCACCAAGAT GCATGGTCTG GGCAACGACT TTATGGTTGT CGATGGTGTG
ACCCAGAACG TGTTCTTCTC GCCGGAACAA ATTCGTCGTC TGGCCGACCG CAATTTCGGT
ATCGGGTTTG ACCAGCTGTT GTTGGTTGAG CCGCCCTACG ATCCGGACCT GGATTTTCAC
TATCGCATCT TCAATGCCGA TGGCAGTGAG GTGGAACAGT GTGGCAATGG TGCCCGCTGC
TTTGCCCGGT TCGTTCGCAA TAAAGGGCTG ACCCAAAAGC ATAAAATCAA GGTTAGTACC
AGTGCAGGCA AGATGACACT GCGCCTTGAA CGCGATGGTG GCGTGACTGT GAATATGGGC
GTTCCCATTC TCGACCCGGC ACAAATCCCC TTTAAAGCTA AAAAATTTGA AAAAACCTAT
CTGCTTCAGT CGGCTCAACA AACCTTTTTA TGTGGTGCTG TGTCCATGGG CAACCCCCAT
GTGGTGCTGG AAGTGGATGA TATTACCCAG GCTCCGGTTG CAGACGTGGG CGCCCAGTTG
ACACGCCACG AACGTTTTCC CAAAGGTGTT AACGTGGGCT TTATGCAGGT TGTGGCCCCA
GACCATATCA AGCTCAGAGT CTACGAGCGG GGGGCCGCCG AGACCCTCGC CTGTGGCAGC
GGTGCCTGCG CAGCCGCCGT GGTGGGGCAG CTTCAGGGGA AATTGGGCAG CCGTGTCCGG
GTAGACTTAC CCGGTGGCAG TTTGACCATC AACTGGGAAG GTGAAGGTAA GCCCCTGTGG
ATGACAGGCC CGGCACAACA GGTATACGAC GGACAAATCC AGTTATGA
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| Protein sequence | MIHFTKMHGL GNDFMVVDGV TQNVFFSPEQ IRRLADRNFG IGFDQLLLVE PPYDPDLDFH
YRIFNADGSE VEQCGNGARC FARFVRNKGL TQKHKIKVST SAGKMTLRLE RDGGVTVNMG
VPILDPAQIP FKAKKFEKTY LLQSAQQTFL CGAVSMGNPH VVLEVDDITQ APVADVGAQL
TRHERFPKGV NVGFMQVVAP DHIKLRVYER GAAETLACGS GACAAAVVGQ LQGKLGSRVR
VDLPGGSLTI NWEGEGKPLW MTGPAQQVYD GQIQL
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