| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3225 |
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| Symbol | |
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| ID | 4605472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3818683 |
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| End bp | 3819654 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639782641 |
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| Product | tRNA-dihydrouridine synthase B |
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| Protein accession | YP_929097 |
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| Protein GI | 119776357 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000851136 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAATTG GACCCTATCA ACTGACCAAT CAGCTGATCG TGGCACCAAT GGCAGGTGTC
ACCGATCAGG CGTTCAGAAA TCTCTGTCTG CGCTATGGTG CTGCCATGGC CGTGTCAGAG
ATGTTGTCTG CCAATCCTGA ACTCTGGGAT ACAGACAAAA GCCGTCAGCG CATGGCACAT
TCGGGAGAGG AAGGCATACG CTCAGTGCAG ATTGCCGGTG CCGACCCCGA ACAGATGGCC
TGGGCCGCCC GCTTCAACGT GGAGCAAGGC GCACAGATCA TCGACATCAA CATGGGCTGC
CCGGCAAAAA AAGTGAATAA AAAGCAGGCC GGCTCGGCAC TGATGCAATA CCCCGACCTG
GTGGAGCAAA TCCTCAGGGC TGTGGTAGGC GCAGTCGAGG TGCCGGTCAC GCTGAAGATT
CGCACGGGGT GGGAACCGGA ACACAGGAAT GGTGTTCAAA TCGCCCGGAT AGCAGAAGAT
TGTGGCATTG CCTCGTTGGC CGTTCACGGC CGTACCCGTC AGTGCATGTA CAAAGGCAAT
GCCGAGTACG ACACCATCCG CGCCATCAAA CAGAGTGTCT CGATTCCTGT TGTCGCCAAT
GGGGACATCG TCAGTCCGGA GAAAGCACGT TTCGTGCTGG ACTACACCGG TGCCGATGCC
CTGATGATAG GACGGGGTGC CCAGGGACGG CCTTGGATTT TCAGAGAGAT CCAGCATTTT
CTCGATACCG GGGAGCAACT GGCACCGGTG GGAGATGAAG AAAAGCGTCG TGTGATGCTC
GAACATCTCT CCAAACTGTA TGACCTGTAT GGCGAATTCA AGGGAATCCG TTTCGCCAGA
AAGCATATGG GCTGGTACCT GGATCAAGAT GAGCAGCGTG ATTTCCGTTC CCAGTTTAAT
GCGCTGGAAA CCGCTGCCGA GCAACGTTCC GCTGTGGAAC GTTATTTCGA CGAATTAGTA
CAGTATCAAT AA
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| Protein sequence | MQIGPYQLTN QLIVAPMAGV TDQAFRNLCL RYGAAMAVSE MLSANPELWD TDKSRQRMAH
SGEEGIRSVQ IAGADPEQMA WAARFNVEQG AQIIDINMGC PAKKVNKKQA GSALMQYPDL
VEQILRAVVG AVEVPVTLKI RTGWEPEHRN GVQIARIAED CGIASLAVHG RTRQCMYKGN
AEYDTIRAIK QSVSIPVVAN GDIVSPEKAR FVLDYTGADA LMIGRGAQGR PWIFREIQHF
LDTGEQLAPV GDEEKRRVML EHLSKLYDLY GEFKGIRFAR KHMGWYLDQD EQRDFRSQFN
ALETAAEQRS AVERYFDELV QYQ
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