| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3188 |
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| Symbol | |
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| ID | 4605435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3780262 |
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| End bp | 3783462 |
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| Gene Length | 3201 bp |
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| Protein Length | 1066 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639782604 |
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| Product | CzcA family heavy metal efflux protein |
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| Protein accession | YP_929060 |
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| Protein GI | 119776320 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTACAGA AACTCATAGA GCAGGCGGTG CGAAGCCGCC TGATAGTGCT GATTTTTCTT
ATCGGGGCCA TGGCGGCTGC CGCCGTGATG TTGCCGAAGT TGAATCTGGA TGCCTTTCCC
GATGTGACCA ACGTGCAGGT GCAGGTGAAT ACCGCCGCCG AGGGCCTTGC CGCCGAAGAG
GTGGAGAAGC TCATCAGCTA CCCGGTGGAG TCGGCCATGT ATGCGCTGCC TTCTGTGACC
GAAGTACGCT CTTTGTCGCG CACCGGGCTT TCCATTGTGA CCGTGGTGTT TGAAGAAGGC
ACCGACATCT ACTTCGCCCG TCAGCAGGTG TTTGAGCAGT TGCAGGCGGC CAGAGAGGCT
ATCCCGGATG GAGTGGGTGT GCCGGAAATC GGCCCCAACA CCTCTGGCCT CGGGCAGGTG
TACCAGTACA TTCTGCGGGC AGCGCCCGAG TCTGGCATAG CGCCTGACGA GCTTCGCAGC
CTCAACGACT ATCTGGTGAA GCTCATCATG ATGCCGGTGG GCGGCGTGAC CGATGTGCTC
TCGTTCGGTG GTGAGGTGCG TCAGTATCAG GTGCAGGTCG ACCCGGCCAA GCTGCTCTCT
TATGGCCTCA AACTGGACGA TGTGACCAGG GCGCTGGAGG GCAATAACCG CAACGCCGGT
GGCTGGTTTA TGGCCAAGGG CCAGGAGCAA CTGGTGGTGC GTGGTTATGG CCTCTTGCCT
GCCGGTGAAG CGGGGCTCGA TGCCATTGCG CAAATTCCGC TGACCGAATG GCAAGGCACG
CCGGTGCGGA TTATGGATGT GGCTCAGGTT GCCTTTGGCA GTGAAATCCG CGTTGGTGCC
GTGACCATGA CCCGCCGTGA TGAAGCCGGT AGTCCGCAGG TGCTGGGTGA AGTGGTGGCT
GGGGTGATTT TGAAGCGCAT GGGCGCCAAC ACCAAGGCGA CCATCGATGA CATCAACAGC
CGCACCGCCC TTATTCAGCA GGCATTGCCG GATGGGGTGA CCTTCGAGGT GTTCTACGAC
CAGTCGGATT TGGTCACCAA GGCGGTGACT ACGGTGCGCG ACGCCCTGTT GCTGGCCTTC
ATGTTTATTG TGGCTGTGCT GGCGCTGTTT TTGGTGAATG TGCGTGCCAC CGCGCTGGTG
CTCCTGTCGA TTCCGGTTTC CATCGCGCTG GCGCTGATGG TGATGTCTTA CTTTGGCATG
TCGGCCAACC TCATGTCCCT CGGCGGCCTT GCCGTGGCCA TTGGTATGCT GGTGGATGGC
TCTGTGGTGA TGGTGGAGAA CATCTTCCGC CACCTCACCC AGCCTGAAGG CCGGGTTGAT
AACGGCTTGC CGACCGACCC TGGCCTCAGC GAAGAAGATG CCCACCGCGA AGGCGGCTAT
GGCGGTATTG CCATGCGGAT TTTGCAGGCG GCACGGGAAG TATGCAGCCC GATCTTCTTT
GCAACCCTCA TTATTATCGT GGTGTTTGCG CCGCTGTTTG CCCTCGAAGG GGTGGAAGGC
AAGCTGTTCC AGCCGATGGC GGTCAGCATC ATTCTGGCCA TGCTGTCGGC ATTGATGGTG
GCGTTGGTGG TGGTGCCTGC GCTGGCGGTG TACCTGTTTC GCCGCGGCGT GCATCTGCGC
CAAAGCCCGC TGCTTACCCC CATCGATAAA GGCTATCGCC GTGTGCTGGG CGCCGTTATG
GCGCGCCCCA AAACCGTGGG GATTACGGCA CTGGTGCTGT TTGGTCTCAG CATGGCGCTG
CTGCCACGGC TTGGCACCGA GTTTGTGCCC GAGCTTGAAG AAGGCACCAT CAACCTGCGG
GTCACCCTGG CGCCCACCGC GAGCCTGGAT ACCTCGCTGA TGGTGGCGCC CAAGCTTGAA
GCCATGCTGA TGGAATTTCC CGAGGTGGAT TATGCGCTGT CGCGTATCGG TGCCCCTGAG
CTTGGCGGCG ACCCTGAGCC TGTGAGCAAC ATCGAAATCT ATATCGGCCT TAAGCCCATC
GATGAGTGGC AGTCAGCCGC CAGTCGCGCC GAGTTGCAGC GACTGATGGA AGAAAAGCTG
TCGGTGTTCC CGGGTCTGCT GTTTACCTTC TCTCAGCCGA TTGCCACCCG GGTGGATGAG
CTCTTATCCG GCGTAAAGGC CCAGCTTGCC ATTAAGCTGT TTGGCCCGGA TCTGGATGTG
CTGGCCGAAA AGGGTCAGCA GCTGTCGGAA CTGGTATCAA AGGTGCCCGG CGCCGTGGAT
GTGTCACTTG AGCAGGTGAG CGGCGAAGCG CAGCTGGTGG TGCGTCCTGA CCGTGCCCGT
CTGGCGCGCT ACGGCATCAG CGTCGATGAG GTGATGAACC TCGTCAGCAC CGGCATAGGT
GGCAGCGACG CCGGGCAGGT GATTGACGGC AACGCCCGCT ACGACATCAA TGTGCGCCTC
AAGGCCGACA CCCGCGCCAG TGCAGATGCC ATAGCGGATC TCTTGCTGGT TGGCGCCAAC
GGCGCCCGGG TACGTCTGGG TGAGGTAGCC GATGTAGTGG TGGAAATGGC GCCGCCGAAT
ATTCGCCGCG ACGATGTGCA GCGGCGGGTG GTGGTGCAGG CCAACGTTTC CGGCCGCGAT
ATGGGCTCGG TGGTGAAAGA CATCTACGCC CTGGTGCCTG AGGCCGATTT GCCGCCGGGT
TATACCGTCA GCGTGGGTGG TCAGTACGAA AACCAGCAAC GGGCCCAGGC CAGGCTGATG
CTGGTGGTGC CTGTGTCCAT CGGTCTTATT GCGCTCTTGC TGTACTTCTC CTTCGGCGCG
CTCAAGCAAG TTGGGCTCAT CATGGCCAAC GTGCCGCTGG CGCTGATTGG CGGCGTGGTG
GCGCTCTATG TCAGCGGCAC GTATCTGTCG GTGCCCAGCT CCATCGGTTT TATCACCCTG
TTTGGCGTGG CCGTGCTCAA TGGCGTGGTG CTGGTGGACT CCATTAACCA GCGCCGCGCA
GGTGGTGAAG GCCTGTATCA GGCGGTGTAC GAAGGCACGG CGGCGCGTCT GCGGCCGGTG
CTGATGACGG CGCTGACCTC GGCGCTGGGG CTGATTCCGA TTTTGCTCTC TAGTGGTGTG
GGCAGCGAAA TTCAACAGCC GCTGGCGGTG GTGATTATTG GTGGCCTGTT CAGCTCGACG
GCCCTGACAC TGCTGGTACT GCCGACCCTG TATATGGCGC TTTATCGGCA GAATGATCGA
GAGCTCGAAG AGCCGGGCTG A
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| Protein sequence | MLQKLIEQAV RSRLIVLIFL IGAMAAAAVM LPKLNLDAFP DVTNVQVQVN TAAEGLAAEE
VEKLISYPVE SAMYALPSVT EVRSLSRTGL SIVTVVFEEG TDIYFARQQV FEQLQAAREA
IPDGVGVPEI GPNTSGLGQV YQYILRAAPE SGIAPDELRS LNDYLVKLIM MPVGGVTDVL
SFGGEVRQYQ VQVDPAKLLS YGLKLDDVTR ALEGNNRNAG GWFMAKGQEQ LVVRGYGLLP
AGEAGLDAIA QIPLTEWQGT PVRIMDVAQV AFGSEIRVGA VTMTRRDEAG SPQVLGEVVA
GVILKRMGAN TKATIDDINS RTALIQQALP DGVTFEVFYD QSDLVTKAVT TVRDALLLAF
MFIVAVLALF LVNVRATALV LLSIPVSIAL ALMVMSYFGM SANLMSLGGL AVAIGMLVDG
SVVMVENIFR HLTQPEGRVD NGLPTDPGLS EEDAHREGGY GGIAMRILQA AREVCSPIFF
ATLIIIVVFA PLFALEGVEG KLFQPMAVSI ILAMLSALMV ALVVVPALAV YLFRRGVHLR
QSPLLTPIDK GYRRVLGAVM ARPKTVGITA LVLFGLSMAL LPRLGTEFVP ELEEGTINLR
VTLAPTASLD TSLMVAPKLE AMLMEFPEVD YALSRIGAPE LGGDPEPVSN IEIYIGLKPI
DEWQSAASRA ELQRLMEEKL SVFPGLLFTF SQPIATRVDE LLSGVKAQLA IKLFGPDLDV
LAEKGQQLSE LVSKVPGAVD VSLEQVSGEA QLVVRPDRAR LARYGISVDE VMNLVSTGIG
GSDAGQVIDG NARYDINVRL KADTRASADA IADLLLVGAN GARVRLGEVA DVVVEMAPPN
IRRDDVQRRV VVQANVSGRD MGSVVKDIYA LVPEADLPPG YTVSVGGQYE NQQRAQARLM
LVVPVSIGLI ALLLYFSFGA LKQVGLIMAN VPLALIGGVV ALYVSGTYLS VPSSIGFITL
FGVAVLNGVV LVDSINQRRA GGEGLYQAVY EGTAARLRPV LMTALTSALG LIPILLSSGV
GSEIQQPLAV VIIGGLFSST ALTLLVLPTL YMALYRQNDR ELEEPG
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