| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3131 |
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| Symbol | |
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| ID | 4605378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3716955 |
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| End bp | 3719858 |
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| Gene Length | 2904 bp |
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| Protein Length | 967 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639782547 |
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| Product | ATP-dependent helicase HepA |
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| Protein accession | YP_929003 |
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| Protein GI | 119776263 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTTTG CGGTTGGGCA GCGCTGGATC AGTGATACAG AATCGGAATT GGGTTTGGGC
ACAGTGGTGC AGATAGAGGG CCGCATGGTT ACTCTGCTGT TTCCTGCCAC CGGTGAAAAC
CGCATGTTTG CCATGGCCGA AGCGCCCCTT ACCCGGGTGA TTTATAACCC CGGAGACACC
ATCGACAGCG CCGAAGGCTG GGGCATGACG GTGGACAAGG TCGAAGAATT AAACGGCCTG
GTATTTTATT TGGGCAAGCG CACCGACACC GGTGAAGACA CCATGCTGCG CGAGACCCTG
CTTGAGCACA ATATTCGCTT CAACAAGCCC CAGGATCGCC TGTACGCCGG CCAGATTGAC
CGTATCGAGC GCTTTGGCGT GCGTTACAAG GCGCAGTTGC TGCGCCACAA GCAAGCCACC
TCGCCACTGC TGGGTCTGCA GGGTCCACGG GTTGGCCTTA TTCCGCATCA GTTGTGGATT
GCCCATGAAG TGGGCCGCCG CCATGCCCCA CGGGTATTGC TCGCCGACGA AGTGGGTCTG
GGTAAAACCA TCGAAGCGGG TCTGATTATC CACCAGCAGC TGATGACAGG CCGCGCCGAG
CGCGTACTGG TGATAGTACC GGACACCCTG CGCCACCAAT GGCTGGTTGA AATGCTGCGC
CGCTTTAACC TGCGCTTCTC CGTGTTTGAT GAAGACCGCT GCGTAGAGGC CTTTGCCGAT
CACGACAACC CCTTCTACAC AGAGCAGCTG GTGATTTGCT CGCTGGAGCT GCTGCGCAAG
AAACGCCGTT TGGAGCAGGC GCTGGATGCC GATTGGGATC TGATGGTGGT GGACGAAGCG
CACCATCTGG AGTGGAGCGA AGACGAACCC AGCCGCGCCT ACCAGGTGGT TGAGGCCCTC
GCCGAAGTGG TGCCCGGTGT CCTGCTGCTT ACCGCCACCC CGGATCAACT GGGCCACCAG
AGCCACTTTG CCCGTTTGCG CCTGCTCGAC CCTGACCGTT TTTACGACTA TCAGGCTTTC
CTCGATGAAG AGAAAGGCTA CCAGGCCGTG GCCGAAGCCG CCGATGCCCT TGCCAGCGGC
ATCAAGCTTT CCGATGAGGC CATCAACGGC CTGACTGAGC TGTTGTCAGA GAAAGACATA
GCCCCGGCTA TTCGCCAGAT CCAGGCCGAA AATCTTGACG AAGAACTGCG CCAGGCCGCC
CGGGACGAGC TGCTGCAGGA GCTTCTGGAC CGCCACGGCA CCGGCCGCGT GCTGTTCCGC
AACAGCCGCG CCTCGGTCAA AGGCTTCCCC AAGCGCGAAT TCCACAGCCA CGGCTTCGAA
CTGCCGGAGC AATACGTAAC CGCCATGCGG GTAAACGCCA TGATGGGCGG CGCCCGCACT
CAGGAAGCCC GGGTGGCACA GGCTCTGAGC CCCGAGCGTA TCTATCAGGA ATTCGATGAC
AATAACGCCA GTTGGTGGAA GTTCGACCCA AGGGTCGACT GGCTTATCGA CTTTTTGAAA
TCCCACCGCT CCAAGAAGGT GCTGGTGATT GCCAGCCGCG CCGAAACAGC ACTGGCGCTG
GAAGAAGCCC TGCGTACCCG CGAAGGCATA CAGGCCACCG TATTCCACGA AGGCATGTCC
ATCATTGAAC GCGACAAGGC CGGGGCTTAC TTTGCCCAGG AAGAGGGCGG CGCCCAGGCA
CTTATCTGCT CTGAAATCGG CTCTGAAGGC CGTAACTTCC AGTTCGCCAG CCAGCTGGTG
CTGTTCGACC TGCCCCTGAA TCCGGATCTG CTGGAGCAGC GTATCGGCCG TCTGGACCGT
ATCGGTCAGC GCCACGATGT ACAGATCCAC CTGCCATTCC TCAAGCACAC TGCTCAGGAA
CAGCTGATGC ACTGGTACCA CGAAGGCCTG TGCGCCTTCG AACTCACCTG CCCCGGTGGC
CATGTGCTCT TTGGCGAGTT TAAAGAGCGC CTGCTCAGTG TACTGACCGG CGAGAGCGAT
GAACTGGACG AACTGATGGC AGACACCAAG GCCCGCTACA AGGCGCTGAA AGCCGCCATG
GAGCAGGGTC GCGACAAGCT GCTGGAACTC AACAGCCACG GTGGTGCCAA GGCCGAAGCC
ATCACAGCAA GCCTCAGCGA CGCCGACGAG GATACCGACC TTATCGCCTC AGTTATCCGC
CTGTGGGACG TGATAGGCAT AGATCAGGAC GACAAGGGTG AAAACTCCAT AGTGCTGCGC
ACCACGGAGC ACATGATGTA TCCCACCTAC CCCGGTCTCA ACGAGGATGG GGTGACTGTG
ACCTTCGATC GCAACACGGC ACTGTCGCGG GACGATATCG CCCTTATCAC TCTGGAGCAC
CCACTGGTGC AAACCGGGCT TGATCTCATC ACAGGCTCAG ATACAGGCAC CACCTGTGTG
GCACTGCTGA AAAACAAGGC GCTGCCGGCG GGCACGATTT TCCTCGAGCT GATTTACCTC
GCCGAAACCA CCGCGCCCAA GGCCAGCCAG CTGTACCGCT ATCTGCCGCC CACGCCGGTG
CGGGTGCTGC TGGATAAGAA CGGCAATAAC CTGTCTGACA AGGTGGACTA CGACAGCTTC
GATAAGCAGC TCTCCGGGGT GAATCGCCAT ATTGCCAGCA AGCTGGTTAA CGCCTCACAG
ACCATGCTGC ACCCGCTGTT TGCCAAAGGT GAAGAGTTCG CCGGTGAGGC ACTTGAAACC
CTGACCCAGG ATGCCAGGGC GCGCATGGAA AGCCAGCTGG GCGCCGAGCT GTCAAGGCTT
GAGGCTCTCA AGGCCGTCAA CCCCAGCATC CGCGAAGAGG AGCTGGAGCA CCTGCGCAAT
ATGATGCAGG AGTTGTCGGG TTACCTTGGC AACACCCAGT TGAAGCTGGA TGCCATCCGC
CTGGTACTGG TGAGCCATAA CTAA
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| Protein sequence | MSFAVGQRWI SDTESELGLG TVVQIEGRMV TLLFPATGEN RMFAMAEAPL TRVIYNPGDT
IDSAEGWGMT VDKVEELNGL VFYLGKRTDT GEDTMLRETL LEHNIRFNKP QDRLYAGQID
RIERFGVRYK AQLLRHKQAT SPLLGLQGPR VGLIPHQLWI AHEVGRRHAP RVLLADEVGL
GKTIEAGLII HQQLMTGRAE RVLVIVPDTL RHQWLVEMLR RFNLRFSVFD EDRCVEAFAD
HDNPFYTEQL VICSLELLRK KRRLEQALDA DWDLMVVDEA HHLEWSEDEP SRAYQVVEAL
AEVVPGVLLL TATPDQLGHQ SHFARLRLLD PDRFYDYQAF LDEEKGYQAV AEAADALASG
IKLSDEAING LTELLSEKDI APAIRQIQAE NLDEELRQAA RDELLQELLD RHGTGRVLFR
NSRASVKGFP KREFHSHGFE LPEQYVTAMR VNAMMGGART QEARVAQALS PERIYQEFDD
NNASWWKFDP RVDWLIDFLK SHRSKKVLVI ASRAETALAL EEALRTREGI QATVFHEGMS
IIERDKAGAY FAQEEGGAQA LICSEIGSEG RNFQFASQLV LFDLPLNPDL LEQRIGRLDR
IGQRHDVQIH LPFLKHTAQE QLMHWYHEGL CAFELTCPGG HVLFGEFKER LLSVLTGESD
ELDELMADTK ARYKALKAAM EQGRDKLLEL NSHGGAKAEA ITASLSDADE DTDLIASVIR
LWDVIGIDQD DKGENSIVLR TTEHMMYPTY PGLNEDGVTV TFDRNTALSR DDIALITLEH
PLVQTGLDLI TGSDTGTTCV ALLKNKALPA GTIFLELIYL AETTAPKASQ LYRYLPPTPV
RVLLDKNGNN LSDKVDYDSF DKQLSGVNRH IASKLVNASQ TMLHPLFAKG EEFAGEALET
LTQDARARME SQLGAELSRL EALKAVNPSI REEELEHLRN MMQELSGYLG NTQLKLDAIR
LVLVSHN
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