| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3060 |
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| Symbol | |
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| ID | 4605307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3637669 |
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| End bp | 3640587 |
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| Gene Length | 2919 bp |
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| Protein Length | 972 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639782476 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_928932 |
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| Protein GI | 119776192 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000347806 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.043287 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAGAA CCAACTTCCG CCGCTCTATG GTGGCAGCAT CAGTCTCAGC ACTGTTCGCA
ATCTCTGTTC CAACGTTTGC AGCAAACAAT ACTTCTGGCT CGATGAAGGG ACAGATTGTT
GATTCTGTAA GTAACAGTGC GCTCGCAGGT GCTACCGTCA CGATTACAAA TAAAGCCAAT
GGCGCAACGA CAACAGTAAC CGTCAGTCAA AATGGTACTT TCCGTATTCC CTCTTTAGAT
ATCGGTGAGT ACAAAATCAC CATCAGCAAA GAGGGATACC AAACACAAGT AATTGAAACA
GCTAAAGTTT CAATTGGTAG CGAAGTCTCT ATCGAAGTGC CAATGGTCGG TGGTGATGTA
GAGCGCATTT CTGTTACTGG TGCCCGAGTG GCCATGGTAG ATACTGCGAC CCCTGAAATT
GCTCTGACTA TCAGTGCCGA TGAGGTTGCC CGCCTGCCTA TTTCTCAGGA TGTGGTGTCT
GTTGCGCTTC TCGCTCCAGG TACAACTAAA GGTGACTCTG CATTCGGCAA TCTCGCATCA
TTTGGTGGTG CATCTGTTGC TGAAAACACC TTTATCATTA ACGGCGTTAA CGTAACGGGT
TTCCGTCGCG GTACCTCTAT TGCTGATATT CCATTCAGCG CATATCAAGA ATTCCAAGTA
AAAACCGGTG GCTATTCAGC TCAGTTTGGC CGTTCTACTG GTGGGGTAGT TAACGCAGTA
ACCAAGCGCG GTAACAACAA CTGGGAATTC GGCGTGGCCG CACGCTGGGA ACCAGATGCT
CTACGTGAAC AGCGTCCTTC TGTTGTTTAT CCTGTAGGAG ATAGCGCTGG CAGTATCCAA
CCGTTTGACA TGTTTTGGGA TAACAGCATG GATAAAACGG ATGACTTCGA GGCCGAGTTT
TCAGCATCTG GCGCTATTAT CGAAGACACA TTGTTCGTTT ATGGTCTGAT CCAACCGCAG
AAGTATGAGA CCCGAAATGC TGCGGCAAGT GGTAGTGAAT ACACTGTGAG TGAAAATGAC
GACCCTCTGT GGCTTGCCCG TGTTGACTGG CAAATCAGCG AAGACCACTC TCTGATGGTG
TGGGGATTCT CCGACGGTGA AGACTATGTG GATACAACCT ACGACCGTGA AACCAATGAA
GTAAGTCGGA TATCAGTTCT TAACACCGGT GGTACCACAT GGTCAGCCCA ATACAAAGGA
CGATTTACTG ATTGGCTTTC TATGGATGCG CTGTATGGCG AAGTTGAATT TAACAGTACT
CGCCAAGCCC CTGAAGATGA AAGCTGTCCA GCCATCTACG ATAGCAGAAA TGGCGGATTG
GTAGCCCTGG GTTGCTGGCA AAACTTTACC GCGAGCGCAG AATCCGATAA GCGCGAACAG
ACCAACCTGA ACTTCAACCT CGATTTGTTT GACGATCATG CTATCCGATT TGGTGTGGAC
TATGAAAATA ACACCTCATT GGAAAGCAGC TTCTACTCTG GTCACTCATA CTACCGTTAC
TACAAAGGTG CTGCTGGTCG TATTCTCGAC AATGGTCATG TACTGGCTCA AGATACTGAA
TTCGTCCGTA CACGTGTGTA TGAAAACGGC GGTGAATTTA CCAGCAAATC GTTGGCGTGG
TATCTGGAAG ATACTTGGAA CATCCTGCCA AACCTGACTG CACGTATCGG TCTGCGCTCA
GAATCTTTTG AAAACCTGAA CGCCAATGAT CAAGCATTTA TCAAGATTGA TAACCAATTA
GCTCCCCGTA TTGGCCTGTC GTGGGATCCA TTTGACGACG GCACATCAAA AGTGTTCGTC
AACTGGGGTC GCTATCATAT TCCTGTCGCC TCTAACACCA ACGTACGTAT GGCCGGTGCA
GAGCTTTACT ATGAAGACTT CCATGTTCTG GATGGCGTAG CAGCAGATGG CACCCCAACT
ATCGGCGCAG CATTGGGCGA TCGTAACGTG TTTGGTAATG GCGAAGCAGC TGACCCTGCA
GAAATCCTTG ATACCTCAAT CGAACCAATG TACCAAGACG AACTCATCTT GGGCTATGAA
ATGAATCTGG ATGAAGACTG GACCACAGGT ATTAAATTTA CCCACCGTGA TCTTAAGCGC
ATCATTGATG ACATCACCAT CGATAAAGGT ATTGTCGCCA ACGGTTGGGA GTATGACCCT
AGCCATGGTG GTTACTATGT GTTGACTAAC CCTAACACTG ACGTGACTGT ATATTACGAT
ACTGATGGCG ATGGCACCCT TGAACAAGTA GTCATCGGTG CTGATCAAAT GGGCTATCCA
GATCCTGAGC GTATGTACAA CTCGGTTGAA CTGACACTGA CCCGTCGTTG GAATGATGAC
TGGACCGTGA ACGCGTCTTA TACCTGGGCA CAAAGCTATG GTAACGCCGA AGGCTATGTG
AAGTCAGACA ACGGTCAAGA TGATGCCGGC TTAACCACCG ACTGGGACTT CCCATACCTT
ATGGATGGTG CTGACGGCTA TCTGCCTAAC GACCGTCGCC ACACCATTAA AGTCTATGGT
GCATACAAGG TAGCTGAAGA CTTTACCGTT GGTGCAAATA TGACGGCTCA GTCAGGCCGT
CCTAAGAATG CCTTTGGTGA TCACCTGCCT GCGGATTATC CAGATCCATA CGAGTATGGC
GACACCTACT ACCCATTTGG ACAGTTGTGC GCTCGTGGTT GTATGGGTCG TGAGGATTGG
CGCTTTACCG TTAACCTGAG TGCGACTTAC AACCTGAGCT TTATTGATGC CGTTGATGCT
GATATTCGTT TAGATGTATT TAACGTCTTT AACTCGCAAA ACGTTATCAA GACCAATGAA
TATCTGGACA TTGGTGGTGA GTACAACCCA GCTTATGGCT TGCCAGAAGA GTTTGAAGAA
CCTCGTTACA TTCGTCTGAG TGCGAATATC AAGTTCTGA
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| Protein sequence | MTRTNFRRSM VAASVSALFA ISVPTFAANN TSGSMKGQIV DSVSNSALAG ATVTITNKAN
GATTTVTVSQ NGTFRIPSLD IGEYKITISK EGYQTQVIET AKVSIGSEVS IEVPMVGGDV
ERISVTGARV AMVDTATPEI ALTISADEVA RLPISQDVVS VALLAPGTTK GDSAFGNLAS
FGGASVAENT FIINGVNVTG FRRGTSIADI PFSAYQEFQV KTGGYSAQFG RSTGGVVNAV
TKRGNNNWEF GVAARWEPDA LREQRPSVVY PVGDSAGSIQ PFDMFWDNSM DKTDDFEAEF
SASGAIIEDT LFVYGLIQPQ KYETRNAAAS GSEYTVSEND DPLWLARVDW QISEDHSLMV
WGFSDGEDYV DTTYDRETNE VSRISVLNTG GTTWSAQYKG RFTDWLSMDA LYGEVEFNST
RQAPEDESCP AIYDSRNGGL VALGCWQNFT ASAESDKREQ TNLNFNLDLF DDHAIRFGVD
YENNTSLESS FYSGHSYYRY YKGAAGRILD NGHVLAQDTE FVRTRVYENG GEFTSKSLAW
YLEDTWNILP NLTARIGLRS ESFENLNAND QAFIKIDNQL APRIGLSWDP FDDGTSKVFV
NWGRYHIPVA SNTNVRMAGA ELYYEDFHVL DGVAADGTPT IGAALGDRNV FGNGEAADPA
EILDTSIEPM YQDELILGYE MNLDEDWTTG IKFTHRDLKR IIDDITIDKG IVANGWEYDP
SHGGYYVLTN PNTDVTVYYD TDGDGTLEQV VIGADQMGYP DPERMYNSVE LTLTRRWNDD
WTVNASYTWA QSYGNAEGYV KSDNGQDDAG LTTDWDFPYL MDGADGYLPN DRRHTIKVYG
AYKVAEDFTV GANMTAQSGR PKNAFGDHLP ADYPDPYEYG DTYYPFGQLC ARGCMGREDW
RFTVNLSATY NLSFIDAVDA DIRLDVFNVF NSQNVIKTNE YLDIGGEYNP AYGLPEEFEE
PRYIRLSANI KF
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