| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3059 |
|---|
| Symbol | |
|---|
| ID | 4605306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3635277 |
|---|
| End bp | 3637466 |
|---|
| Gene Length | 2190 bp |
|---|
| Protein Length | 729 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639782475 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_928931 |
|---|
| Protein GI | 119776191 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000942986 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.160447 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAACC TAGTGGCAGC GGCTCTGGTG CTTTCTTCCG GAGTGGCACT CGCCGACGAA
GGCCAGTGGC AACCTTATCA AATGCCTTCC ATCGCAGACA AACTCAAAGC CCGCGGTATA
GACATCCCAG CAGAGCAGTT GGCCGACTTA AGCCGCTATC CCATGAACGC CGTGGTGGGG
CTGGGCTATT GTACCGCCAG TTTTGTATCC CCCCAAGGGC TGGCGGTGAC AAATCATCAC
TGCGCATTCA GAGCCATTCA ATATAACAGC AGTAAAGAGA AAAACTATCT TGCCGATGGC
TTCCTGGCGA CCAGCATGGA TAAAGAGCCT TCCGCTGGCC CCAACGAGCG CCTGTACGTG
ACCGAAGCCG TGACAGATGT CAGCGCGCAA ATCCGTGACG CCCTGCCGGA AGAGCCGCTG
GCCCGTGTTG AAGCCATTGA AAATCGTCAA AAAGCGCTCA TCAAAGAGTG TGAGAGTGAC
GATAACTACC GCTGCTCGGT CAGAAGCTTC CACAACGGGC TGGAATACTA CCTTATCAAG
CAGTTGATGA TCCGCGATGT ACGCCTCGTC TACGCGCCTC CTGAAAGTGT TGGTGGCTAC
GGCGGCGATA TCGACAACTA CGAATACCCT CGCCACAGCG GCGATTTCAC CTTCCTGCGT
GCCTATGTTG GTAAAGATGG CAAACCGGCA CCTTACGCTG AAGACAACGT GCCATATCAG
CCAAAAAGCT TCCTCAAAAT TAACGCCAGC GGCGTGAAGG CCGGTGATGG TGTATTTGCA
GCAGGCTATC CAGGCTCAAC CAGCCGCTAC CGTTTGACCA CCGAACTTGA GTTTGCCAGC
GACTGGCTCT ACCCCACCCA GGCCAAACGC TTCCAGGCCC GCATCGATAC CATCGAAGCC
ATGGGCGCTG CCGACACTGA ATTGGCCATC AAGTACGCAG GTACCGTGGC AGGCATGGCC
AACCGCATGA AGAAGCTTAA CGGTCTGCTC GACGGCTTTA AGGCCACCGA CATTGCCGCC
ATCAAGCAGC AACGTGAAGA TGCCTTTATG ACCTGGTATG CCAGCCATGG CGATGCCAAG
CAGATGGATG AGCTCAAGGC ACTGATTAAA GAAGGCCAAA CTCAGTATCA GACCACCTAC
TACTTCAACA ATGCTCAATC GAGCGATCTG CTCACTGCAG CAAACAGCCT GTATCGCCTG
GCCAAAGAGA AACAAAAAGC CGATGCCGAC CGTGAGCTGG GCTATCAGGA ACGGGACATG
AAGATGTTCG CCGATCGCCT GAAACGTATC GATTCAAGCT TCGACGTTAA AGTCGACAAG
GTGCTGTGGC AGGCGGATAT CGAAGAGTAT CTCGGTCAAA ACCAGCGCGT CGATGTGTTG
GATAAGATGC TGACAGTTAA AGAAGGACAG GATCTGTCAT CCATGCTGGA TGGACTCTAT
GCAGCCACCG GCCTCACCGA CCAGGCCACG CGCCTTGGGT GGATGGACAA AACCCCGGCG
GACTTTGAAG CCAGTGACGA TCCTTTTATC AAACTGGCAG TGGCGCTCTA CGACACCCGT
ATGGCCCAGG AAAAAGCGGA AAAAACGCTG GATGGTAAGC TCAGTATTGC CCGCCCGGCG
ATGATGCAGG CCGTGATTGC CTACAACAAG GATAAAGGCT GGCCAGTATA CCCGGATGCC
AACGGCACTC TGCGTATCAC CTACGGTATG GTAGATGGCT ATCAGTCACG TGATGCACTC
TACAAGCAGC CCTTCACCCG TCTGGAAGGC ATAGTAGCCA AACACACTGG CGTAGAGCCA
TTTAACGCGC CACAAAAGGT GCTGGATGCC ATCAAGCGTG GTGACATGGG CAAACATAAT
GTGGATGACC TCTACCCAGA CGCCCGCAGT TTTATGTGTA AGCTGTTCTC TTGCCTGGAT
AAACCCGAAG CCTTTAATTC GGTACCGGTC AACTTCCTGT CCAGCGTAGA CACCACGGGC
GGCAACTCAG GCTCTCCGGT ATTCAATGGT CGTGGTGAAT TGGTGGGGCT CAACTTTGAT
TCCACCTATG AAGCCATCAC CAAAGACTGG TTCTTCAACC CTGAAATCAC CCGTGCAGTC
CATGTGGATG TTCGCTATAT CCTGTGGATG ATGGACAAGG TGGATAACGC GCAGAATTTG
TTACAGGAAC TCACCCTGGT AACTAATTGA
|
|---|
| Protein sequence | MRNLVAAALV LSSGVALADE GQWQPYQMPS IADKLKARGI DIPAEQLADL SRYPMNAVVG
LGYCTASFVS PQGLAVTNHH CAFRAIQYNS SKEKNYLADG FLATSMDKEP SAGPNERLYV
TEAVTDVSAQ IRDALPEEPL ARVEAIENRQ KALIKECESD DNYRCSVRSF HNGLEYYLIK
QLMIRDVRLV YAPPESVGGY GGDIDNYEYP RHSGDFTFLR AYVGKDGKPA PYAEDNVPYQ
PKSFLKINAS GVKAGDGVFA AGYPGSTSRY RLTTELEFAS DWLYPTQAKR FQARIDTIEA
MGAADTELAI KYAGTVAGMA NRMKKLNGLL DGFKATDIAA IKQQREDAFM TWYASHGDAK
QMDELKALIK EGQTQYQTTY YFNNAQSSDL LTAANSLYRL AKEKQKADAD RELGYQERDM
KMFADRLKRI DSSFDVKVDK VLWQADIEEY LGQNQRVDVL DKMLTVKEGQ DLSSMLDGLY
AATGLTDQAT RLGWMDKTPA DFEASDDPFI KLAVALYDTR MAQEKAEKTL DGKLSIARPA
MMQAVIAYNK DKGWPVYPDA NGTLRITYGM VDGYQSRDAL YKQPFTRLEG IVAKHTGVEP
FNAPQKVLDA IKRGDMGKHN VDDLYPDARS FMCKLFSCLD KPEAFNSVPV NFLSSVDTTG
GNSGSPVFNG RGELVGLNFD STYEAITKDW FFNPEITRAV HVDVRYILWM MDKVDNAQNL
LQELTLVTN
|
|---|
| |