Gene Sama_2861 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2861 
Symbol 
ID4605108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3398749 
End bp3400263 
Gene Length1515 bp 
Protein Length504 aa 
Translation table11 
GC content56% 
IMG OID639782272 
Productresponse regulator receiver protein 
Protein accessionYP_928733 
Protein GI119775993 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCTAATG GTGTAACCCA TCGAGGGCTC GCAAATGGCG GGCCCTTACG TTATCGTGTA 
GTGGCTGAAT TAACCAAGAT GAATCAAATG GATAAGATAT TAATCGTCGA CGACAATCTG
GATGTTTGCC AGGCACTTTC ACTGATGCTT GAACTGAACG GTTACAAAAG CCATTGCGTG
CAGAGTCCTG AAATGGCGCT CGATGCCATT GAGAAGCACG AGTTTTCGCT GGTGATCCAG
GACATGAATT TCACCCGCGA TACCACCAGC GGTGAGGAAG GCCGGGAACT GTTTCATGCT
CTGCGTGAGT GTCGTCCGGG GATCCCCATC ATACTTCTGA CTGCCTGGAC CGAGCTTGAA
ATGGCCGTGG AGCTGATGAA AGCCGGTGCC GCCGATTATT TGGGTAAGCC CTGGGACGAT
GCCAAGTTGC TCACCAGCAT TGGCAACCTG ATTTCGCTGC ACAAACTGTC ACGGGAAAAC
GGCGAACTGA AGCGCCAGAA GGCCGAGCGC ACCGCGGTTA TTCACGAGGC AAACCTCTGT
GGCCTGGTGT TTGGCAGCAC GGCCATGGAG CGTTGCGTGG ATCTGGCGCT GCAACTGGCC
AAATCGGACG TATCCGTGCT GATCACTGGT CCCAACGGCG CAGGTAAAGA TCGCCTGGCC
GACATTCTCC ATGCCAATTC GCCATTAAAA GACAAACCCT TTATCAAGGT GAATGTGGGC
GCCTTGCCCA TGGAGCTGAT GGAGGCCGAA CTCTTTGGCG CCGAGGCTGG CGCCTTTACC
GGCGCCACCA AGTCCCGTAT CGGCCGCTTT GAAGCCGCCA ATGGTGGCAC CCTGTTTTTG
GACGAGATTG GCAATCTGCC TTTGAGCGGC CAGGTGAAAT TGCTGCGGGT GCTGCAAACC
GGAGAATTTG AACGCCTTGG CAGCCACCAG ACCCGTAAAT GTAAGGTCAG GGTGCTCAGC
GCCACCAATG CCGATTTGCG TCAGGATATT CAGACTGGGC GCTTTCGTGA AGATCTTTTC
TACCGCCTGA ACGTGGTGGA GCTGGCATTG CCGCCCCTGT GCGAGCGTCG CGATGATGTG
CTGCCCCTGG TGCAACACTT TACCCGGGGA CGGGCATTGG ATGCCTCTGC CAAGGCGGCG
CTGCTGGCCC ATTCCTGGCC GGGCAATGTG CGTGAGTTGG AGAACGCCTG TAAGCGGGCG
GATATCCTGG CCAGAGGCGA GATGCTGAGT GCGGTGGATT TTGGTTTGAT GCCGACACAA
ACGCCGCAAC CCGCGGTAAA TCAGTCCGGG ATTTCTTCGA ATGAGGCGCA TCATAACGAG
CCCTTTAACA CTCTTCTTCC CGAGTCAGAA CCGGTTAACA CAGCGCCAAA CCGAAGCGAG
ATAGAGGCCG CCATTACCGC CCACAATGGG GTGATTGCCA GGGTGGCCAA ATCCTTTGGA
CTCAGCCGTC AGGCGCTGTA TCGCCGCATG GAGAAGTTCG GCATTGAGGT GAAGTCCTCC
AAGGCCGAAG GATAA
 
Protein sequence
MSNGVTHRGL ANGGPLRYRV VAELTKMNQM DKILIVDDNL DVCQALSLML ELNGYKSHCV 
QSPEMALDAI EKHEFSLVIQ DMNFTRDTTS GEEGRELFHA LRECRPGIPI ILLTAWTELE
MAVELMKAGA ADYLGKPWDD AKLLTSIGNL ISLHKLSREN GELKRQKAER TAVIHEANLC
GLVFGSTAME RCVDLALQLA KSDVSVLITG PNGAGKDRLA DILHANSPLK DKPFIKVNVG
ALPMELMEAE LFGAEAGAFT GATKSRIGRF EAANGGTLFL DEIGNLPLSG QVKLLRVLQT
GEFERLGSHQ TRKCKVRVLS ATNADLRQDI QTGRFREDLF YRLNVVELAL PPLCERRDDV
LPLVQHFTRG RALDASAKAA LLAHSWPGNV RELENACKRA DILARGEMLS AVDFGLMPTQ
TPQPAVNQSG ISSNEAHHNE PFNTLLPESE PVNTAPNRSE IEAAITAHNG VIARVAKSFG
LSRQALYRRM EKFGIEVKSS KAEG