Gene Sama_2701 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2701 
Symbol 
ID4604948 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3232313 
End bp3232876 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content52% 
IMG OID639782112 
Productpeptidyl-prolyl cis-trans isomerase 
Protein accessionYP_928573 
Protein GI119775833 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACTCG CCCACCAGCA CCATTCATTT CGGCTGTTAC TGCCCTTAAT GACACTTTGT 
CTCGCCCTGA TTGGCACAGG GGTGAAGGCA GAAAATCTTG TCACCATAGA AACCAGTCTG
GGTGACATGA CCTTTGAGTT TTTCCCCAAT GAAGCGCCAA GGACAGTCGC CAACTTTCAA
CGACTCGCTC AAAGCGGTTG GTACGAAGGC AAGTCCTTTT ATCGGGTCGT CAAGGGGCAT
GTTATTCAGG CAGGCAGCCT GGATGAAAAC ACAGAGCCCA GGGTGGAAGC CGAGTTCAAC
CAGCATCCCC ACATCAAAGG CACCCTGGGG CTTGCCCGGG ACGAAGACCC CAACTCAGGC
TCCACGGAAT TTTACATCTG CCATGAAGCG AGGCCACACC TGGATGGCCG CTATACCGTG
TTTGGCCAAC TGGTTGAGGG CGAAGCCGTA CTCGATGCCA TCGCCAATCA GGAAGTGATT
GAAAAATATT ATGATGAAGA CAAAAAAATC GCCTTCCACG AGCCCAAAAC GCCTGTGTTA
ATCAAGGCCA TACGTCTGCA TTAA
 
Protein sequence
MQLAHQHHSF RLLLPLMTLC LALIGTGVKA ENLVTIETSL GDMTFEFFPN EAPRTVANFQ 
RLAQSGWYEG KSFYRVVKGH VIQAGSLDEN TEPRVEAEFN QHPHIKGTLG LARDEDPNSG
STEFYICHEA RPHLDGRYTV FGQLVEGEAV LDAIANQEVI EKYYDEDKKI AFHEPKTPVL
IKAIRLH