Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2687 |
Symbol | |
ID | 4604934 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 3215921 |
End bp | 3217522 |
Gene Length | 1602 bp |
Protein Length | 533 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 639782098 |
Product | DEAD-box ATP dependent DNA helicase |
Protein accession | YP_928559 |
Protein GI | 119775819 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.915441 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTTG CCTCACTGGG CCTGTCGGCG CCCATCCTCA AAGCCCTCGA TCATAAGGGC TATAAAACCC CGTCTCCCAT TCAGGCCCAG GCCATTCCTG TAGTGCTTGA AGGACGGGAT TTGCTCGCCG CCGCTCAGAC TGGTACCGGC AAAACCGCAG GCTTTACCCT GCCCTTGCTC GAATTGTTAT CCCAAACCCA AAAGGCCGGC CCCAAGCAGG TGCGCGCCCT TATCCTGACT CCCACCCGGG AGCTTGCGGC GCAAATCGCC GATAACATCA CCGCTTACAG CAAGTATCTG CCGCTGAAAA GCACCGTGGT ATTTGGTGGG GTAGGTATTG GCCCGCAGAT CACCACCCTG CGCCGTGGCA TCGACATCCT GGTGGCAACG CCGGGCCGCC TGCTGGATTT GCATCAGCAA AACGCCGTCA GCTTCCATGG TCTGGAAATT CTGGTGCTGG ACGAAGCCGA CCGCATGCTG GACATGGGCT TTATCCACGA CATCAAACGC ATCCTGAAGC TGCTGCCTGC CAAGCGTCAA AACTTGCTGT TTTCGGCTAC TTTCTCCCCT GAAATCCGCA CCTTGGCCCA TGGACTGTTG CACAATGCCG CCGAGGTATC TGTTACCCCG AGAAACAGCG CCGCCGAAAG CGTCAAGCAG TGGATAGTGC CGGTGGACAA AAACCAAAAG CCGGCCCTGC TTGCCGAGCT GACCCGTTTT TACCGCTGGC AGCAGGTACT GGTATTTTGC CGCACCAAGC ACGGCGCCAA CCGTCTGGTA CGCCAGATGG ATGCCGAAGG CATCAAGGCT GCGGCCATCC ATGGTAACAA GAGTCAGAAC GCCCGCACCC AGGCGCTGGC CGACTTCAAA CGCGGCGCCA TTCGCATGCT GATTGCCACC GATATTGCGG CCCGCGGTAT CGATATCAGT GAATTGCCCA ACGTGGTCAA CTTCGAGCTG CCCCACGTAC CGGAAGACTA CGTACACCGC ATTGGCCGTA CCGGCCGCGC CGGTGCCAGC GGTGAAGCGG CCTCTTTGGT TTGCAATGAA GAAGCCAAGC AACTCAGAGA CATTGAGCGA CTGATTAAGC AGTCACTGCC CCGCAAAGAG TTTGTGGGTT TTGAACCTGT TCACGGCCTG CCCCCCAGTG AAAATCAGGG CAAGTCCAAG CCAGGTGGAA GTAAGCAAGG CGCCAAGCCC GGCAATAAGA GCCAGGGACG AAAGCCTCAG GGCCAGAGCC GCAATGCCCA GCCAAAGCAG CGCCAGGGAA GCCGGGCACA GGAAGAGCGC AGTCAGCAGG ACAAAAATCC ATCTCGCAGC GAACAGCCAC GCCGTGAAAG AAGGGGTAAC GACCAGGCTC GCAGTGAAAG GCCCCACAGC GCCAGGGCTC ATGGTGATAA AGCTCGTAGC GACAACGCTC GTAGCGAAAA CGGCCGCAGC GATGCCCGCA CTGACAGCGC TCGAAACGAC AAGCCCCGCA GCGACCGCCC GAACACTGAC AGAGCTGCCA GCAACAAGCC CCGCAGCGGC AATCGCCCCC AGGGACAGGG CCAGCAGCGG CCCCGCAGTA GTGCCAAAGG TGGCGAGCGC AATCAGGGCT AA
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Protein sequence | MSFASLGLSA PILKALDHKG YKTPSPIQAQ AIPVVLEGRD LLAAAQTGTG KTAGFTLPLL ELLSQTQKAG PKQVRALILT PTRELAAQIA DNITAYSKYL PLKSTVVFGG VGIGPQITTL RRGIDILVAT PGRLLDLHQQ NAVSFHGLEI LVLDEADRML DMGFIHDIKR ILKLLPAKRQ NLLFSATFSP EIRTLAHGLL HNAAEVSVTP RNSAAESVKQ WIVPVDKNQK PALLAELTRF YRWQQVLVFC RTKHGANRLV RQMDAEGIKA AAIHGNKSQN ARTQALADFK RGAIRMLIAT DIAARGIDIS ELPNVVNFEL PHVPEDYVHR IGRTGRAGAS GEAASLVCNE EAKQLRDIER LIKQSLPRKE FVGFEPVHGL PPSENQGKSK PGGSKQGAKP GNKSQGRKPQ GQSRNAQPKQ RQGSRAQEER SQQDKNPSRS EQPRRERRGN DQARSERPHS ARAHGDKARS DNARSENGRS DARTDSARND KPRSDRPNTD RAASNKPRSG NRPQGQGQQR PRSSAKGGER NQG
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