Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2676 |
Symbol | |
ID | 4604923 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 3201868 |
End bp | 3205044 |
Gene Length | 3177 bp |
Protein Length | 1058 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639782087 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_928548 |
Protein GI | 119775808 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0314551 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAAAG CGAGTGAAGT ACTGGCAGGT CGTTACGACA ACGCCAATCT CGACGAATTG TTCAGTCTGA TCAGTCAAAA CTACATCGTT GATGAGGAAG CCTACCTCAA AGAACTGATT GCGCTGGTTC CGTCGAGCGA CGAAGAAATC GCGCGCATCA CCAGCCGTGC CCACGATCTG GTGGCCAAGG TTCGCCAATA CGAGAAGAAA GGTTTGATGG TTGGCATTGA TGCCTTCCTG CAACAGTACT CTCTGGAAAC CCAGGAAGGC ATTATCCTCA TGTGCCTGGC CGAGGCGCTG CTGCGTATTC CGGATGCCGA AACCGCCGAC GCCCTGATTG CCGACAAGCT TTCCGGTGCC AAGTGGGATG AGCACATGTC CAAGAGCGAC TCCGTGCTGG TAAACGCCTC CACCTGGGGC CTTATGCTCA CAGGCAAAAT CGTCCAACTC GACAAAAACC TCGACGGCAC CCCAAGCAAT CTGCTGAGCC GTCTGGTCAA CCGTCTGGGT GAGCCTGTTA TTCGTCAGGC CATGTACGCC GCCATGAAAA TCATGGGCAA GCAATTCGTA CTGGGTCGTA CCATCGAAGA AGGCCTGAAA AACGCCGCCG AGAAGCGCAA GCTGGGTTAT ACCCACTCCT ACGACATGCT TGGCGAAGCC GCCCTGACCA TGAAGGATGC CGACAAGTAC TACCGCGATT ACGCCAATGC CATTCAGGCA CTGGGTACGG CCAAGTTTGA TGAGAGCGAA GCCCCACGTC CCACCATTTC CATCAAGCTG TCTGCCCTGC ACCCACGCTA CGAAGTAGCC AACGAAGACA GGGTGATGAC CGAGCTGTAC GCCACCCTGA TAAAGCTTAT CGAGCAGGCA CGAAGTCTTA ACGTGGGCAT CCAGATTGAT GCTGAAGAAG TAGACCGTCT CGAACTGTCG CTGAAACTCT TCAAAAAGCT GTATCAGTCT GACGCCGCCA AAGGCTGGGG TTTACTGGGC ATTGTGGTGC AGGCTTACTC CAAGCGTGCT TTGCCAGTGT TGATGTGGCT GACCCGCCTT GCTAAAGAAC AGGGCGATGA AATCCCACTA CGCCTGGTAA AAGGCGCTTA CTGGGACAGC GAACTCAAGT GGGCTCAGCA AGCCGGTGAA GCAGGCTACC CGCTGTTTAC CCGCAAGGCT GCCACCGACG TGTCTTACCT TGCCTGTGCC CGTTATCTGC TGTCTGAAGC CACCCGCGGC GTTATCTATC CGCAGTTTGC CAGTCACAAC GCCCAGACGG TTGCCGCCAT CACCGCCATG GTGGGCGATC GCAAGTTTGA ATTCCAGCGT CTGCACGGTA TGGGTCAGGA ACTCTATGAC ACTGTGCTGG CCGAAGCCGC CGTACCCACA GTGCGAATCT ACGCCCCGAT AGGCGCCCAC AAGGACCTGC TGCCTTACCT GGTGCGTCGT CTGCTTGAAA ACGGTGCCAA CACCTCATTT GTACACAAAC TGGTGGATCC CAAGACGCCC ATCGAGTCGC TGGTGACCCA CCCGCTGAAA ACCCTGCAAG GCTACAAGAC CCTGGCAAAC AACAAAATAG TTAAGCCCGC CGACATCTTC GGTGCTGAGC GTAAAAATTC CAAGGGACTC AATATGAACA TCATTTCCGA ATCCGAGCCA TTCTTCGCTG CTCTGGAGAA ATTCAAGGAC ACCCAGTGGA GCGCAGGTCC GCTGGTCAAC GGTGAGACCC TGTCGGGTGA AGTGCGTGAC GTAGTCAGCC CATACAACAC CACCCTGAAA GTGGGTCAGG TCGCCTTCGC AAACGAAGCC ACCATAGAAC AGGCCATTGC CGGTGCCGAC AAGGCATTTG CCAGCTGGTG CCGCACCCCG GTTGAGACCC GCGCCAATGC ACTGCAAAAG CTGGCGGATC TGCTGGAAGA AAACCGCGAA GAGCTGATTG CCCTGTGTAC CCGTGAAGCC GGTAAGAGCA TTCAGGACGG TATCGACGAA GTGCGTGAAG CCGTGGACTT CTGCCGCTAC TACGCGGTGC AGGCCAAGAA GATGATGAGC AAGCCTGAGC TGCTCCCAGG CCCAACAGGC GAGCTGAACG AACTCTTCCT GCAGGGTCGT GGCGTGTTTG TGTGTATCAG CCCATGGAAC TTCCCGCTGG CCATCTTCCT CGGTCAGGTA GCCGCCGCAC TGGCAACCGG CAACACAGTG ATTGCCAAGC CAGCAGAGCA AACCTGCCTG ATTGGTTTCC GCGCGGTGCA GCTGGCCCAT GAAGCCGGCA TTCCCAAAGA CGTACTGCAA TTCCTGCCGG GTACAGGTGC CGTAGTGGGT GCCAAGCTGA CCTCCGATGA GCGCATCGGC GGCGTGTGCT TTACCGGTTC TACCACCACA GCCAAGGTTA TCAACCGTGC GCTGGCCGGT CGTGATGGCG CCATCATCCC GCTGATTGCC GAAACCGGTG GTCAGAACGC CATGGTGGTT GACTCCACCA GCCAGCCTGA ACAGGTAGTG AACGATGTAG TATCTTCAGC CTTTACCAGC GCCGGTCAGC GCTGCTCTGC CCTGCGTGTA CTCTATTTGC AGGAAGACAT CGCCGAACGC GTTCTGGACG TGCTCAAGGG TGCAATGGAT GAGCTGACTC TGGGTAACCC AGGCTCAGTG AAGACCGACG TAGGCCCTGT GATTGATGCT GCCGCCAAGG CCAACCTGAA TGCTCACATC GACCATATCA AGCAGGTGGG TCGTCTCATT CACCAACTGA GCCTGCCGGA AGGCACCGAA AACGGTCACT TCGTGGCGCC AACTGCGGTG GAAATCGATT CCATCAAGGT ACTGACCAAA GAAAACTTCG GTCCTATCCT GCACGTGGTG CGCTACAAGG CCGCCGGCCT GCAGAAGGTT ATCGATGACA TCAACTCTAC CGGCTTCGGT CTGACTCTGG GTATCCACAG CCGTAACGAG GGCCATGCCC TGGAAGTGGC CGACAAGGTA AACGTGGGTA ACGTGTATAT CAACCGTAAC CAAATCGGCG CCGTGGTGGG TGTGCAGCCA TTCGGTGGCC AGGGCCTGTC CGGCACTGGT CCAAAAGCCG GTGGTCCACA CTACCTGACG CGCTTTGTAA CCGAGAAGAC CCGCACCAAC AACATCACCG CCATCGGTGG TAATGCGACC CTGCTGTCTC TGGGCGACGC CGACTGA
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Protein sequence | MFKASEVLAG RYDNANLDEL FSLISQNYIV DEEAYLKELI ALVPSSDEEI ARITSRAHDL VAKVRQYEKK GLMVGIDAFL QQYSLETQEG IILMCLAEAL LRIPDAETAD ALIADKLSGA KWDEHMSKSD SVLVNASTWG LMLTGKIVQL DKNLDGTPSN LLSRLVNRLG EPVIRQAMYA AMKIMGKQFV LGRTIEEGLK NAAEKRKLGY THSYDMLGEA ALTMKDADKY YRDYANAIQA LGTAKFDESE APRPTISIKL SALHPRYEVA NEDRVMTELY ATLIKLIEQA RSLNVGIQID AEEVDRLELS LKLFKKLYQS DAAKGWGLLG IVVQAYSKRA LPVLMWLTRL AKEQGDEIPL RLVKGAYWDS ELKWAQQAGE AGYPLFTRKA ATDVSYLACA RYLLSEATRG VIYPQFASHN AQTVAAITAM VGDRKFEFQR LHGMGQELYD TVLAEAAVPT VRIYAPIGAH KDLLPYLVRR LLENGANTSF VHKLVDPKTP IESLVTHPLK TLQGYKTLAN NKIVKPADIF GAERKNSKGL NMNIISESEP FFAALEKFKD TQWSAGPLVN GETLSGEVRD VVSPYNTTLK VGQVAFANEA TIEQAIAGAD KAFASWCRTP VETRANALQK LADLLEENRE ELIALCTREA GKSIQDGIDE VREAVDFCRY YAVQAKKMMS KPELLPGPTG ELNELFLQGR GVFVCISPWN FPLAIFLGQV AAALATGNTV IAKPAEQTCL IGFRAVQLAH EAGIPKDVLQ FLPGTGAVVG AKLTSDERIG GVCFTGSTTT AKVINRALAG RDGAIIPLIA ETGGQNAMVV DSTSQPEQVV NDVVSSAFTS AGQRCSALRV LYLQEDIAER VLDVLKGAMD ELTLGNPGSV KTDVGPVIDA AAKANLNAHI DHIKQVGRLI HQLSLPEGTE NGHFVAPTAV EIDSIKVLTK ENFGPILHVV RYKAAGLQKV IDDINSTGFG LTLGIHSRNE GHALEVADKV NVGNVYINRN QIGAVVGVQP FGGQGLSGTG PKAGGPHYLT RFVTEKTRTN NITAIGGNAT LLSLGDAD
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