| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2618 |
|---|
| Symbol | |
|---|
| ID | 4604865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3134018 |
|---|
| End bp | 3136567 |
|---|
| Gene Length | 2550 bp |
|---|
| Protein Length | 849 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639782029 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_928490 |
|---|
| Protein GI | 119775750 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000702632 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.386313 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCTC AAAAATGGAT TCTGAGCAGT TGTGCGTTAG CCGTTGCCTT GGCGCTGCCT
TCTGTTGCTG TCGCCGCAGA AGATGGTGCA AAAGTTGAGC GTCTGGAAGT CACAGGCTCT
CGCATCAAGC GAACTGACAT AGAAGGCCCA TCACCCATCC AATCCATTGG CAAAGACGAC
ATTGCCAATA TGGGTTTTGA TAACCTGCAA CAATTACTCG AGAAAATGCC TGCCAACGGC
GCCGGTGCTT TTTCTACCCG GGGTAACAGT CAGGATTCTA CCGCTAACGG CTCTGCCTCT
ATCAGCCTCA GGGGCCTTGG TCCGGATGCG ACCCTGGTAC TCATTAACGG TCGCCGCGTA
GCCATCAGCT CATTTGCCGA AGGCGTGAGC AACTCCTTCG TTGACATTAA CAACATCCCG
GTTTCGGCCA TTGAGCGCAT CGATATTCTG AAAGACGGCG CCTCTGCAAT TTACGGCTCC
GACGCCATTG CCGGTGTAGT GAACATTGTT CTGAAGAAGG ATATCGAAGG CATCGAAGTC
AACCTCGGTT ATGGTGGCGC TACAGGCCCC CATTATGACG AAAAAACGGC GAACCTGGTT
TGGGGTACCA AGGGTGATAA AGGCACTGCC TCTATCATTC TCGACTACTT TAAGAACTCT
ACCCTCAGCG CCGATGAAAT GGGCCGTTTC GGTACCGCGA ACCAAGAGCC CTATGGCGGC
GATGACAACC GTTCCTCCCG TGGTTACCCT GGTTATTTCT ATGTCGATGG CGTGAAAACT
CCGGACCCCG ATTGTCCTGC CGATCGCCTC ACGGGTAGTG GCAGTTGTTT GTTCGACTAC
GGTCCTTATA ACCTCACCAT CCCTGCCGCT GAGCGTGTAG GTGCCATAGG TCAATTCGAG
TATTTCTTCG ATAATGATGT GACTGCTTTT CTGGAATTCG CTGTGCAGCA CAACACTTCC
GAAGCCGGCG GTGCGGCAAC TCCACTCGAT GAATCCGCAG GCTTGACTGT GCCTGGTACC
CACCCCGATA ACCCATGGGG TAAAGACATT CTGATTGGTC GTTATCGTCC GGTGGACGCT
GGTGCACGCC GTTGGGATAT TGAATCGGAC TCGATGAGAC TGGTTGCTGG CTTGCGTGGC
ACCCTGAATG AGTGGGATTG GGAAGTTGCT GCACAAAAGG GACGTCAGGA ACAGACTCAG
ACCGGTGACC GTAGTCAAGG TTGGGTTCGT GTGGATTACT TGCAGCGTGA GATTGATGCT
GGCCGTTACA ATCCATTTGG AGCTGCCGTC AACTCACCCG ACGTTATCGA TGCTATCACC
ACCAGTCTGG TGCGTCAGGG CGTCTCCCAC ATGACGGCTT ACAATGCCAG CATTACCGGT
CAGGCGTTCA CCCTGGCCGA ACGTGATGTG ATGATGGCTG CGGGCGTTGA ATATCGTGAA
GAAGACGTAA GCGACGTGCC CGATGAGCAG TTCCAGCGTG GGCTGATTTT CGGTACCGAG
GCTGTTTCTG CAAACGCCGA GCGTGACCAA TGGGCTGCCT ACGTCGAGTT CTCTATTCCG
GTTACTGATA ACTTTGAACT GCAGCTGGCA GGTCGGTACG ACAATTACAG CGATTTTGGC
ACCACCACCA ATCCAAAGGT GGCTTTCCAA TGGGGTATCA CTGACGAAAT CACCGCCCGT
GGTTCCTGGG CTACCGGCTT CCGCGCACCA TCCCTGGCAC AGATTGGCCT GGGCCCTTCA
CAGGAAAGTT TGTTCCTGGA TGATTACTAC TTCTGCCAGG CAAATGGTTT AGATGCATCC
GAGTGTGAGA ATTTGGACCA AAACTTCCTG TTCTCAGGGA ACAAAGAGCT GGAGGCTGAA
GAGTCTGAAA GTTGGAACGT GGGTATGATT TACGCCCCGA ATCAGTCATT TGATCTGAGC
TTGGACTGGT ACAACATCAC GCAGGACAAT AAGATCGACA AGCTTGAGCC TCAAGATGTG
TATGACGCCA ATTGCGGCTC TCAGAACAGT CCTATTTGTC AGCGATTGGC TCCGGTTGGC
GCTGACTCGT TGGGAACGAT TGACAAGATC TTGTCCAGCT TTGTGAATAT CAGCTCTCAG
GAAGTGCAAG GTATCGACGT GTCCAGTCAC TATACTTTGG CTACCGATGG TTATGGTGAC
GTAAAGTTTG GGCTGGAATA CAGCTATCTG ATGGACTTTG AGAAAGGTGA TAAAGACTGG
ACCGGAAAGT ATCGTTTCCC AGAGCACCGT TGGTTAGGTA CTACTAATTG GACCAAAGAT
GATTTGTCAG TCAACCTCAA CCTTAGCTAC ATAGGTGAAT TTGCTGACTA TAATGAAACC
CGCAACGTAG ACGCCCAGCT GTTGGTGGAT ATGTCAGCGT CCTATCGCTT CAGTGAAACT
TTGAAGTGGA CTATTGGTAT GAATAACGTG CTGGATGAAG AGCCTCCATT TGCCATTGGT
GATGGCGATG GCGATCTCTA TGGCTACGTG ATGGCGACTC ATAACCCAAT GGGACGTTAT
GCCTACATCA AGCTGAATAT CAACTTCTGA
|
|---|
| Protein sequence | MKAQKWILSS CALAVALALP SVAVAAEDGA KVERLEVTGS RIKRTDIEGP SPIQSIGKDD
IANMGFDNLQ QLLEKMPANG AGAFSTRGNS QDSTANGSAS ISLRGLGPDA TLVLINGRRV
AISSFAEGVS NSFVDINNIP VSAIERIDIL KDGASAIYGS DAIAGVVNIV LKKDIEGIEV
NLGYGGATGP HYDEKTANLV WGTKGDKGTA SIILDYFKNS TLSADEMGRF GTANQEPYGG
DDNRSSRGYP GYFYVDGVKT PDPDCPADRL TGSGSCLFDY GPYNLTIPAA ERVGAIGQFE
YFFDNDVTAF LEFAVQHNTS EAGGAATPLD ESAGLTVPGT HPDNPWGKDI LIGRYRPVDA
GARRWDIESD SMRLVAGLRG TLNEWDWEVA AQKGRQEQTQ TGDRSQGWVR VDYLQREIDA
GRYNPFGAAV NSPDVIDAIT TSLVRQGVSH MTAYNASITG QAFTLAERDV MMAAGVEYRE
EDVSDVPDEQ FQRGLIFGTE AVSANAERDQ WAAYVEFSIP VTDNFELQLA GRYDNYSDFG
TTTNPKVAFQ WGITDEITAR GSWATGFRAP SLAQIGLGPS QESLFLDDYY FCQANGLDAS
ECENLDQNFL FSGNKELEAE ESESWNVGMI YAPNQSFDLS LDWYNITQDN KIDKLEPQDV
YDANCGSQNS PICQRLAPVG ADSLGTIDKI LSSFVNISSQ EVQGIDVSSH YTLATDGYGD
VKFGLEYSYL MDFEKGDKDW TGKYRFPEHR WLGTTNWTKD DLSVNLNLSY IGEFADYNET
RNVDAQLLVD MSASYRFSET LKWTIGMNNV LDEEPPFAIG DGDGDLYGYV MATHNPMGRY
AYIKLNINF
|
|---|
| |