| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2594 |
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| Symbol | lipB |
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| ID | 4604841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3101908 |
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| End bp | 3102558 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781995 |
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| Product | lipoate-protein ligase B |
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| Protein accession | YP_928466 |
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| Protein GI | 119775726 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0321] Lipoate-protein ligase B |
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| TIGRFAM ID | [TIGR00214] lipoate-protein ligase B |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00491142 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGCAAGCCA AGACTCTGCA TATCAGACAT CTGGGTAATC AGGATTATGA AACTGTCTGG
CACGCCATGC AGCATTACAC CGATAACCGC GATGAAAACA GCCCGGACGA ACTCTGGTTG
GTTGAACATC CTCCGGTATT TACCCAGGGG CAAGCCGGTA AAGCCGAGCA CATCCTCAAT
CCCGGCGACA TCCCTGTTAT CCAGGTAGAC CGCGGTGGTC AGGTGACGTA TCACGGCCCG
GGTCAGTTGG TTGCATACCC CCTGCTGGAC ATCAAACGCC TTAAAATCGG TGTTCGTCAG
CTGGTTACCC ATATAGAGCA GAGCATAGTC GACATGCTGA AGCCCTACGG CGTACAAGCC
TACGCTAAAG CCGATGCCCC CGGAGTCTAT GTTGACGAGC GTAAAGTCGC CTCCCTTGGC
CTGCGAATCC GCCGTGGTTG TTCTTTCCAC GGTCTGGCAC TGAACGTCGA CATGGATATT
TCCCCCTTCC AGCGCATCAA CCCCTGTGGC TATGCCGGCC TGGAAATGGT TCAGTGCAAA
GCACTGGGCG GCCCCAATAC CGTAAACGAA GCAGGTGAAA AACTCACCCT CACCTTTAGC
CAGCTTCTTG GCTATGAGCA TCTGGTCCAT CACCAAGGAT TAGCAGAATA A
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| Protein sequence | MQAKTLHIRH LGNQDYETVW HAMQHYTDNR DENSPDELWL VEHPPVFTQG QAGKAEHILN
PGDIPVIQVD RGGQVTYHGP GQLVAYPLLD IKRLKIGVRQ LVTHIEQSIV DMLKPYGVQA
YAKADAPGVY VDERKVASLG LRIRRGCSFH GLALNVDMDI SPFQRINPCG YAGLEMVQCK
ALGGPNTVNE AGEKLTLTFS QLLGYEHLVH HQGLAE
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