| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2557 |
|---|
| Symbol | |
|---|
| ID | 4604804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3064679 |
|---|
| End bp | 3065164 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639781952 |
|---|
| Product | putative nucleotide-binding protein |
|---|
| Protein accession | YP_928429 |
|---|
| Protein GI | 119775689 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1666] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.317915 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTCAT TTGATATTGT TTCGGAAGTG GATGCCGTTG AGCTTAAAAA CGCTGTGGAA
AACACCCGCC GTGAAATGGA TGGCCGTTTT GATTTTCGTG GTGTTGAGTA CAGTGTGGAT
TTCAAGGATA TGGTGGTCAT CCTGCGTTCA GAGTCGGATT TCCAGTGTCG TCAGATGGTG
GATATTCTCA GAGGCCAGCT TGCCAAACGC AACGTGGATG CCAAGGCCAT GGAAGTGGAC
GACAAGATAG TCCACACCGG CAAAACCTTT GCACAAAACG TGAAGTTCAA GCAGGGCATA
GAGCAGGATG TGGCCAAGAA GCTTATCAAG CTGATTAAAG ACAGCAAGGT GAAGGTGCAG
GCGCAAATTC AGGGTGATTC GATTCGGGTC ACAGGCAAGA AGCGCGATGA CTTGCAGGCC
ATTATGCAAC TGGCCCGCAC ATCAGAGCTG GGCCAGCCTT TTCAGTTCAA TAACTTCCGC
GACTGA
|
|---|
| Protein sequence | MPSFDIVSEV DAVELKNAVE NTRREMDGRF DFRGVEYSVD FKDMVVILRS ESDFQCRQMV
DILRGQLAKR NVDAKAMEVD DKIVHTGKTF AQNVKFKQGI EQDVAKKLIK LIKDSKVKVQ
AQIQGDSIRV TGKKRDDLQA IMQLARTSEL GQPFQFNNFR D
|
|---|
| |