Gene Sama_2542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2542 
Symbol 
ID4604789 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3051884 
End bp3052975 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content53% 
IMG OID639781937 
ProductTRAP-type mannitol/chloroaromatic compound transport system, periplasmic component 
Protein accessionYP_928414 
Protein GI119775674 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.604361 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAACAA GATTAAGGAT TTGCATGTTG ATGGCCGCGA GTTTGTTGGC CGGCTGCAAT 
GATGATAAAC AAGCTGCTGA GGCCACACCG ATAGACAGTG CCAAACAGAT AGAATGGAAG
CTTGCCACCT CCTGGCCCAA GAACTTTCCC GGCCTTGGCA CAGCGCCTGA ACACTTTGCC
GTGATGGTGG ATGAAATGTC GGCCGGACGT CTCAAAATCA AGGTGTATGG GGCAGGGGAG
TTGATGCCGG CACTGGAAGT GTTTGATGCA GTCAGTCAGG GCTCGGTGCA GATGGCCCAC
AGCGCGTCTT ATTATTGGAA AGGCAAGGCG CCGGCGGCGC AGTTTTTTAC CTCCATACCC
TTCGGGCTCA ATGCCCAGGA GATGAATGGC TGGCTGACCT ATGGCGGAGG ACAGGAGTTG
TGGGAAGAGG TGTATGCTCC TTTTGGTATT CTGCCTTTGC CGGGGGGCAA CAGCGGCGTA
CAGATGGGCG GATGGTTTAA TAAAGAAATC AACACTATCG ATGACCTTAA AGGGCTTAAA
ATGCGTCTGC CAGGCCTGGG CGGCGAAGTG TTGAAGCGAT TGGAAGGTGT GCCCGTTACC
CTCCCGGGGC GTGAACTCTA TACGGCCATG CAAACAGGGG CCATTGATGC TACCGAATGG
GTGGGACCTT ACAACGATTT AGCCTTTGGC CTGCATAAGG TCGCCAAGTA TTACTACTAT
CCCGGCTGGC ATGAACCGGG TACCACACTG GAATTCATGA TTAACAAAGC CGCCTTCGAG
AAATTGCCCA AGGATTTACA GGCAATTGTG AAGATAGCGG CAAAGGCGAC CAATCAGGAT
ATGCTGGATG AATACACCGC CCGCAACGTG GGGGCGCTGG ATGCGTTGGT AAATGAACAT
GGGGTGGTAC TCAAACAGTT TCCCGAAGAA GTGATGGCGC AGCTCAGAAG CGTATCGGCT
GAGGTAATTT CTGAACAGTC GAGCCAGGAT CCCATGATGA AAAAAGTGAA CGAAGCCTAC
CGTGAATACG AGGCTGGCGT CAGGAAGTAC CATCTGATTT CTGAGGACGC CTACACCCGT
TTACGTGAAT GA
 
Protein sequence
MQTRLRICML MAASLLAGCN DDKQAAEATP IDSAKQIEWK LATSWPKNFP GLGTAPEHFA 
VMVDEMSAGR LKIKVYGAGE LMPALEVFDA VSQGSVQMAH SASYYWKGKA PAAQFFTSIP
FGLNAQEMNG WLTYGGGQEL WEEVYAPFGI LPLPGGNSGV QMGGWFNKEI NTIDDLKGLK
MRLPGLGGEV LKRLEGVPVT LPGRELYTAM QTGAIDATEW VGPYNDLAFG LHKVAKYYYY
PGWHEPGTTL EFMINKAAFE KLPKDLQAIV KIAAKATNQD MLDEYTARNV GALDALVNEH
GVVLKQFPEE VMAQLRSVSA EVISEQSSQD PMMKKVNEAY REYEAGVRKY HLISEDAYTR
LRE