Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2542 |
Symbol | |
ID | 4604789 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3051884 |
End bp | 3052975 |
Gene Length | 1092 bp |
Protein Length | 363 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639781937 |
Product | TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
Protein accession | YP_928414 |
Protein GI | 119775674 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.604361 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAACAA GATTAAGGAT TTGCATGTTG ATGGCCGCGA GTTTGTTGGC CGGCTGCAAT GATGATAAAC AAGCTGCTGA GGCCACACCG ATAGACAGTG CCAAACAGAT AGAATGGAAG CTTGCCACCT CCTGGCCCAA GAACTTTCCC GGCCTTGGCA CAGCGCCTGA ACACTTTGCC GTGATGGTGG ATGAAATGTC GGCCGGACGT CTCAAAATCA AGGTGTATGG GGCAGGGGAG TTGATGCCGG CACTGGAAGT GTTTGATGCA GTCAGTCAGG GCTCGGTGCA GATGGCCCAC AGCGCGTCTT ATTATTGGAA AGGCAAGGCG CCGGCGGCGC AGTTTTTTAC CTCCATACCC TTCGGGCTCA ATGCCCAGGA GATGAATGGC TGGCTGACCT ATGGCGGAGG ACAGGAGTTG TGGGAAGAGG TGTATGCTCC TTTTGGTATT CTGCCTTTGC CGGGGGGCAA CAGCGGCGTA CAGATGGGCG GATGGTTTAA TAAAGAAATC AACACTATCG ATGACCTTAA AGGGCTTAAA ATGCGTCTGC CAGGCCTGGG CGGCGAAGTG TTGAAGCGAT TGGAAGGTGT GCCCGTTACC CTCCCGGGGC GTGAACTCTA TACGGCCATG CAAACAGGGG CCATTGATGC TACCGAATGG GTGGGACCTT ACAACGATTT AGCCTTTGGC CTGCATAAGG TCGCCAAGTA TTACTACTAT CCCGGCTGGC ATGAACCGGG TACCACACTG GAATTCATGA TTAACAAAGC CGCCTTCGAG AAATTGCCCA AGGATTTACA GGCAATTGTG AAGATAGCGG CAAAGGCGAC CAATCAGGAT ATGCTGGATG AATACACCGC CCGCAACGTG GGGGCGCTGG ATGCGTTGGT AAATGAACAT GGGGTGGTAC TCAAACAGTT TCCCGAAGAA GTGATGGCGC AGCTCAGAAG CGTATCGGCT GAGGTAATTT CTGAACAGTC GAGCCAGGAT CCCATGATGA AAAAAGTGAA CGAAGCCTAC CGTGAATACG AGGCTGGCGT CAGGAAGTAC CATCTGATTT CTGAGGACGC CTACACCCGT TTACGTGAAT GA
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Protein sequence | MQTRLRICML MAASLLAGCN DDKQAAEATP IDSAKQIEWK LATSWPKNFP GLGTAPEHFA VMVDEMSAGR LKIKVYGAGE LMPALEVFDA VSQGSVQMAH SASYYWKGKA PAAQFFTSIP FGLNAQEMNG WLTYGGGQEL WEEVYAPFGI LPLPGGNSGV QMGGWFNKEI NTIDDLKGLK MRLPGLGGEV LKRLEGVPVT LPGRELYTAM QTGAIDATEW VGPYNDLAFG LHKVAKYYYY PGWHEPGTTL EFMINKAAFE KLPKDLQAIV KIAAKATNQD MLDEYTARNV GALDALVNEH GVVLKQFPEE VMAQLRSVSA EVISEQSSQD PMMKKVNEAY REYEAGVRKY HLISEDAYTR LRE
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