Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2533 |
Symbol | |
ID | 4604780 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3042011 |
End bp | 3043036 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639781928 |
Product | thiamin biosynthesis lipoprotein ApbE |
Protein accession | YP_928405 |
Protein GI | 119775665 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.903036 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGA CCTTATCTAA CTGGCTGGTC CTCGTCGGAC TGGCCTTTTT TATTTCAGCT TGTTCTAAAG CACCTGAGGT TGTCAGCCTG TCTGGCAGCA CCATGGGCAC CACGTATCAC ATCAAGGTGG TTCCCAGTGA CGCCTTACCC CAAAGCCAGC TGCTGCAGGC AGAAATTGAC CTGGCGTTGG AGCGCGTGAA TGACCAGATG TCTACTTACC GTCCCACCTC TGAGCTGAGC CGCTTCAATC AGTTGCCATT GGAGCAGGGT GTTGAGGTGT CGGATGACAC TATCAAGGTG GTCCGAGAGG GAATTCGCTT AAATGAGCTA ACCGACGGCG CGCTGGATAT TACTCTGGGC CCACTGGTCA ATATCTGGGG GTTTGGACCG GACAAGCGAC CAACTAAATC CCCCACCGAA GCTGAAATCG CCGACGCCAA GACTCGCACC GGTATTCAGA ACATCAGCAT TGAAGGTAAC CGCCTCTTTA AGCGCAACGC TCACCTTTAT GTGGATTTGT CATCCATTGC CAAGGGCTAT GGCGTGGATG TGATTGCCGA TTTACTGGAT AAGTATCACA CCAGCGGTTA TCTGGTAGAA ATTGGCGGTG AACTGCGTAT CAAGGGCACC AAGGGTGATG GTAGCAGCTG GCGTGTAGCC GTTGAAAAGC CACAGGCTGA AGGCCGTGCG GTGTCTCAGG TAATAGAACC CGGTGATATG GGTATGGCTA CCTCTGGCGA TTATCGCAAT TACTTCGAAG AAAATGGCAA ACGCTTCTCA CATCTGATAG ACCCAAGGAC CGGTTATCCC ATCGAGCACA CCCTCGCATC TGTGACAGTG CTGCATCCAA GCTGTATGAC TGCCGACGGC CTGGCGACGG CCATGATGGT GCTCGGCACG GAAGCGTCAT TGATTCTTGC CAAACAGCAG GGACTGGCGA TAATGCTGAT TGAAAAACAG GGCGAAGAGT TTGTGGTACA CTACAGCGAC GCATTTTTGC CCTTCGTTAA GTCCACTCAG GAGTGA
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Protein sequence | MKKTLSNWLV LVGLAFFISA CSKAPEVVSL SGSTMGTTYH IKVVPSDALP QSQLLQAEID LALERVNDQM STYRPTSELS RFNQLPLEQG VEVSDDTIKV VREGIRLNEL TDGALDITLG PLVNIWGFGP DKRPTKSPTE AEIADAKTRT GIQNISIEGN RLFKRNAHLY VDLSSIAKGY GVDVIADLLD KYHTSGYLVE IGGELRIKGT KGDGSSWRVA VEKPQAEGRA VSQVIEPGDM GMATSGDYRN YFEENGKRFS HLIDPRTGYP IEHTLASVTV LHPSCMTADG LATAMMVLGT EASLILAKQQ GLAIMLIEKQ GEEFVVHYSD AFLPFVKSTQ E
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