Gene Sama_2483 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2483 
Symbol 
ID4604731 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2984015 
End bp2985154 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content54% 
IMG OID639781879 
Productoxygen-independent coproporphyrinogen III oxidase, putative 
Protein accessionYP_928356 
Protein GI119775616 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.274904 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAGCTTG AACTGCCTCC TCTGAGCCTT TATGTCCACA TCCCCTGGTG TGTGCAAAAA 
TGCCCCTATT GCGACTTTAA CTCCCACGGA AAACAAGGCG ATTTACCCCA GGAAGCCTAC
GTCGATGCGC TGCTGGCAGA CCTTGATGCC GATTTGAATT ATGTCCAGGG ACGTACGCTT
TACAGCATTT TCATCGGCGG CGGCACCCCG TCGCTGTTTG ATGCCAGCGC CATCGGCCGC
CTCCTCGACG GTATTAAGGC CCGCATCCCC TTTTGTGATG ACATAGAAAT CACCATGGAA
GCCAATCCGG GCACTCTGGA GCACGATGAT TTCAGCGCTT ACCGCGGGGC AGGCGTCACC
CGCCTCTCAG TGGGCGTACA GAGCTTCAGC AAGGACAAGC TTAACCTCCT TGGCCGCATT
CACGGGCGCG ATGAGGCAAC CCGGGCGGCA GAGCTTGCCA CTGCCGCTGG CTATCAGAGC
TTTAACCTGG ATTTGATGCA TGGTCTGCCC AATCAATCAT TTGATGAGGC CATGGCCGAT
ATAGACACGG CGGCCAGCCT AAATCCTCCC CATCTGTCCT GGTATCAGCT CACCATCGAG
CCAAATACTC TGTTTCACTC GCGGCCTCCG CAGTTGCCGG ACGACGAAGC GCTTTGGCAT
ATCTACGAAC AAGGCCAGAA AAAGCTCGCG GCCCTGGGAT ATGAGCAGTA TGAGATTTCA
GCCTACGCCA AACCGGGCTT TCAATGCCGT CATAATCTCA ATTACTGGCA GTTTGGTGAC
TACCTCGGTA TTGGCTGCGG AGCCCACGGC AAGGTGACGA TCCCCACCGA AAACTGCATT
ATTCGAACGG TAAAAATAAA ACATCCCAAG GGATACCTGG CAGCCAGCGA TTATCTGTCT
GAACTGACAC AAGTGCAGGA AGAAGACCGC CCACTTGAAT TTTTGATGAA CCGCTTGAGG
CTGATGACCC CCATCGCCAA ACGTGAATTT GAATCCCGCA CCGGCCTGAA TGCCAGCCTG
CTTGATGAAG GGATGGCACA GGCGAGCGAA AAAGGCCTTA TCGTACTTGG CGACGAGAGT
TGGACCCTGA CCCCAAAGGG CCACATGTTC GTTAACGACT TACTGTCCCA TTTTCTCTGA
 
Protein sequence
MKLELPPLSL YVHIPWCVQK CPYCDFNSHG KQGDLPQEAY VDALLADLDA DLNYVQGRTL 
YSIFIGGGTP SLFDASAIGR LLDGIKARIP FCDDIEITME ANPGTLEHDD FSAYRGAGVT
RLSVGVQSFS KDKLNLLGRI HGRDEATRAA ELATAAGYQS FNLDLMHGLP NQSFDEAMAD
IDTAASLNPP HLSWYQLTIE PNTLFHSRPP QLPDDEALWH IYEQGQKKLA ALGYEQYEIS
AYAKPGFQCR HNLNYWQFGD YLGIGCGAHG KVTIPTENCI IRTVKIKHPK GYLAASDYLS
ELTQVQEEDR PLEFLMNRLR LMTPIAKREF ESRTGLNASL LDEGMAQASE KGLIVLGDES
WTLTPKGHMF VNDLLSHFL