| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2448 |
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| Symbol | |
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| ID | 4604697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2946576 |
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| End bp | 2949686 |
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| Gene Length | 3111 bp |
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| Protein Length | 1036 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639781845 |
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| Product | sensory box protein |
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| Protein accession | YP_928322 |
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| Protein GI | 119775582 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAGG GTATTTTCTT TCCGCTGGTC CAAAATGCCG CGCTGCTATT GGCGCTGGTG
TACCTTTATG ACGCCATCCC CTGGCTGAAA CAGCAGCGGA TCCGGTGGGT TTGGCACATC
ATGCTGGGAT TGGTGATTGG CGCCATCGGC ATGACCATCA TGTCTGCCCG CTACGAATTT
GCCGAGGGGA TCTACTTTGA TACCCGAGGT GTGCTGCTCA GTGTCAGCGG TCTCTATTTC
GGCGCAGTTC CCACCCTGAT TGCCTCAGCC ATGATGGCCA TCTATCGCTA CGGTATGGGC
GGTCCGGCCA TGGTGGCCGG TATTGCCGGT ATTGCGTTCG CTGCTGCCAT GGGGATCCTG
TGGCGCATCC CCTGGCAGAA AAATCTGATA GAGGTAAGCA CAGGGTCTTT GTTGCTGCTT
GGCATGCTGG TTAATATCGG CAGCTTGCTG TGCTTCTTCA TTATGCCCTT TGATCTCGCC
TGGGAGCTGG TGTCCACCAT AGGTACAACC GTCATGCTGG TATGCCCCTT GGCGACCTTG
TTGCTCGCGA GGTTATTGGC CCGGCGCCTG GAGATTGAAC GGGACGAAAA AATAAAGCTG
CAGGATGATT TCCTGTTTCG CTCCCAATTC AATGTCGGCA ACATCGGCAT TGCCATCACC
TCGGTCGACA AACGCTGGAT TAAGGTTAAC CCCAGGCTGT GCCAGATGCT TAAGTATTCC
GAAAAAGAGC TGCTGTCGAT GAACTGGGAG CAGATGTCCC ACGAAGAGGA TATCTCGGTG
GATCTTGCCC ATTTCAATCA GATGCTGGCG GGGGCAATAG ATCAGTACGA ACTCAATAAG
CGCTTCTATG CCAAGGATGG CAGCATAGTG TATACCCACA TGACGGTGGC CTGTAAGCGC
ATCGCTGGCA AGGTACAGCT GGTGATTGCC GGGTTTATGG ATATCTCAGC TCAAACCCAA
TCTGAAATGT CGGTGCGCGC CAGTCGGGAA CAGTTATCCC TGGTGCTTGC CTCTGCCGAA
CTGGGATTCT GGGATTGGGA TTTGAACAAT GACGTGATTG ATCGCAACGA ACGTTGTGCA
GACATGCTGG GATGCTCGGT GGACGAAATG CGTCATAACC ACAGGATTTG GATGGATTCC
ATTCATCCGG ACGATCGCAT GGCGGTGCTT AAGTCCATTG ACAGGCATTT GCAGGGCCAC
ACCGACAGTC ATAACGTGGA ATATCGCATT ATTCGCAAAA ACGGCGAGAC GCTCTGGGTT
CGGGACACGG GGCGGGTAAT GCAAAAAGAC AGCAGTGGCA AGGCCATCAG AATGTGCGGT
GTGCATCTGG ATATTACCCA GGTTCGCCAC AACCAGGAGC AGATGGAGCT TGCGGCCTCG
GTTTATAACA ACTCCAGTGA AGCCATGAGC GTGATGGACC ACAAAGGCAA CATCATCACG
GTCAACGCCG CGTTTGCGGA TATTACCGGT TATTCGCCCA AAGAGGTGCT GGGGCATCAT
ATCAGCCAAT TTTATTGCCC CCGAAACAAG CCGGCTTTTT ATGATGAGGT CAACCAGGCC
ATCAAAGAAA CCGGTCGTTG GCAGGGGGAA ATGTGGCAAC AGCACAAAAA CGGCAAGGAA
TACCTCATTT GGCTCACCGT GAATACCATT TACGATGCCT ATCAAAGGCC CCATCGCCGG
GTGGCACTAT TCTCTGATAT CACCGAGAAA AAAGCCCAGG AGCAGCTTAT TTGGCAGCAG
GCAAACTACG ACCCCCTCAC CAAGTTGCCC AACAGGCGCA TGTTGCTGGA TTACCTCGAC
CGGGAGATTT CCCTGGCGTC CCGTCAGAAT GTGCGCTTTG CGCTGCTGTT TTTGGATTTG
GATTTTTTCA AAGAGGTCAA CGACACCCTT GGCCATGATA TGGGGGACAA ACTGCTTATT
GAATGCGCTG ACAGGATCAA AGCCTGTATC CGCGACTCGG ATGTGGTGGC GCGTCTTGGT
GGTGACGAAT TTACTGTATT GATCCGTGAT ATCCACGATG TGGGTGGGGT AGAGCGGGCG
GCCAGTAATA TTCTCAAGGC CATCGCCGAG CCATTTCAGC TGGGGCCGGA TTCGGCCTAC
ATCAGCGTCA GTATCGGCAT TACCCTGTTC CCCGAGGATG CCAGTACCCG AGAGGCGCTG
CTGAAAAATG CCGATCAGGC CATGTATGCG GCCAAGGAGC AGGGGCGTAA TCGCTTCAAT
TACTTCACGC CATCCATGCA GGAGCAGGCC AAGTACCGGA TGCGGCTTAT CCAGGATTTA
CGCATTGCCA TTGAGCATCA GCAGTTTAAT CTGGTGTATC AGCCCATAGT GCATCTGCAA
AGCGGCAAGG TGCACAAGGC CGAAGCCCTG CTGCGCTGGC ATCATCCTGA GCGGGGATAT
ATCTCTCCGA CCGAATTTAT TCCGGTTGCT GAAGACACAG GGCTGATTAT GGAAATAGGC
TCCTGGGTAT TTGAGCATGC GGCGCGGCAA TGCCGCGATT GGCACCATGA ATTTGGCACA
ACCATTCAAC TGTCGGTGAA CAAGTCGCCG GTGCAGTTTC GTGATGAAGG GGAAAACTTT
GAGCGCTGGG TTGCCCTGCT GGAGGAGCTC GAATTAACCC ACGGTGGCAT CTGCATCGAA
ATTACCGAAG GTTTGTTATT GGATGCCTCC TCCGGGGTGG CTGAAAAACT GCTCACCTAC
CGCGACGCTG GCATTCAGGT GTCTTTGGAT GATTTCGGCA CCGGCTATTC GTCGCTGGCG
TACCTGAAAA AATTTGATAT CGATTACCTT AAAATTGACC AGTCCTTTAC CCGAAATCTG
GAAAACGACG CCAGTGACAG AACCCTGTGT GAGGCCATTA TTGTGATGGC CCAAAAGCTG
GGGATGAAGG TGATTGCCGA AGGGGTTGAA ACCGCAAAAC AGCAAGAGAT CCTCAAGGCT
ATGGGCTGTG ACTATGCCCA GGGCTACCTT TATTCTGCGC CTGTCTCCCG GGAGGAATTC
GAAACACGTT TTCTGAAAGG GGATCCCAAT CAGGCGCCGC AGCCCGATAA GCCTGAAACC
CGGAAGGCCA AGACCAGGGC CAAGGCACCC CAAAAGGCAC AGGATGCATG A
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| Protein sequence | MTQGIFFPLV QNAALLLALV YLYDAIPWLK QQRIRWVWHI MLGLVIGAIG MTIMSARYEF
AEGIYFDTRG VLLSVSGLYF GAVPTLIASA MMAIYRYGMG GPAMVAGIAG IAFAAAMGIL
WRIPWQKNLI EVSTGSLLLL GMLVNIGSLL CFFIMPFDLA WELVSTIGTT VMLVCPLATL
LLARLLARRL EIERDEKIKL QDDFLFRSQF NVGNIGIAIT SVDKRWIKVN PRLCQMLKYS
EKELLSMNWE QMSHEEDISV DLAHFNQMLA GAIDQYELNK RFYAKDGSIV YTHMTVACKR
IAGKVQLVIA GFMDISAQTQ SEMSVRASRE QLSLVLASAE LGFWDWDLNN DVIDRNERCA
DMLGCSVDEM RHNHRIWMDS IHPDDRMAVL KSIDRHLQGH TDSHNVEYRI IRKNGETLWV
RDTGRVMQKD SSGKAIRMCG VHLDITQVRH NQEQMELAAS VYNNSSEAMS VMDHKGNIIT
VNAAFADITG YSPKEVLGHH ISQFYCPRNK PAFYDEVNQA IKETGRWQGE MWQQHKNGKE
YLIWLTVNTI YDAYQRPHRR VALFSDITEK KAQEQLIWQQ ANYDPLTKLP NRRMLLDYLD
REISLASRQN VRFALLFLDL DFFKEVNDTL GHDMGDKLLI ECADRIKACI RDSDVVARLG
GDEFTVLIRD IHDVGGVERA ASNILKAIAE PFQLGPDSAY ISVSIGITLF PEDASTREAL
LKNADQAMYA AKEQGRNRFN YFTPSMQEQA KYRMRLIQDL RIAIEHQQFN LVYQPIVHLQ
SGKVHKAEAL LRWHHPERGY ISPTEFIPVA EDTGLIMEIG SWVFEHAARQ CRDWHHEFGT
TIQLSVNKSP VQFRDEGENF ERWVALLEEL ELTHGGICIE ITEGLLLDAS SGVAEKLLTY
RDAGIQVSLD DFGTGYSSLA YLKKFDIDYL KIDQSFTRNL ENDASDRTLC EAIIVMAQKL
GMKVIAEGVE TAKQQEILKA MGCDYAQGYL YSAPVSREEF ETRFLKGDPN QAPQPDKPET
RKAKTRAKAP QKAQDA
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