| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2418 |
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| Symbol | |
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| ID | 4604667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2910129 |
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| End bp | 2911685 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639781815 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_928292 |
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| Protein GI | 119775552 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.659104 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGACG CCAACGAAGC GATTTCGCAA ATCACGCTAC TCAAACAGAA ACTCCATTCT
GCAAAGGTGG CGTTGGATGA GCTCAATGAA GATCGCAACG CCAAGTTGCA AACCCTGCTG
CAGTTCATTT CCAATCTGAG CCTGGCCTGC AAAGGGCAAA ATCTGGAGTT GGATAACCGG
CTTGCCAAGT TACGCCACCA ACTGACTACC TACGAAAAGC TCGACGATGC CCTGCCGGAT
ATTGTCGAAG TGGAGCGCTT GCTCAAGGGC CAATACCACC ATGTCATGGC ACAGCTCGAA
GACAGTCGAG CAGGCCTTGG ACGGGTAGTA CGCCAAATTC AACGTGTCGA GTCCGCACCC
GACAAACTCA AAAAAGAAGT CGCCTACTTC AAACAGGATC TCTCCAAGCC TCTGCACACC
GTGTGGGAAT ATATCCCCAA GGTCGAAAAG TTGATGGCGT TTTACGAAGA GATACTGTCG
GCACAGTTTA ATTCCGGCGA ACCTTTGGCA GTGCTGCCCA AACACCGTCA ACTGGCCCAT
GAGCTGGCCC AAATCATCTC CGAAATCGAG TTTCGCAAAG ACCAGCGCGA TCAGGTGCTG
GTGATTAAAG AAATGTTGGC CGGTGAGATA GATGTTGAGG GGCTGATGGA TGCCTATCAA
ACCATACTGT CCCTGCTGGT TGATAATATC GCCCGAGAGA AAAGCGCCTC TCAGGAATTC
CTCTATGCCC TGAATGATGC CTTGTCTGCA GTGCGCGAAG TCGTCTCAGA CTCCTATAAC
CATACTCAGC GCAGTCATCA GCTCAAGCAT CAACTGAATC GTGAAATCAA CTCCCGGGTT
GATAACGTTG GCGAAGCCAT AGTGGATATC GAAGATATCA CTACGCTCAA GTTTCAAATT
ACCGAGCAGC TGTCCAGCCT GCGCTCGGCA CTGTCCCGTA AAGAAGCCCT GGAGCAAAGA
GAACAAGCCT TGCTGCGCAA GTCGATGGAG ACCATGCGCA AAGAACTCAA TGAACTTGCT
GAAGAAGCCA GCAACTATAA AGAGCGCTTG TTTGAACAGC AAAAGCTGAA TCTACTGGAT
ACGCTCACCC AATTGCCCAA TCGGGCTGCA CTGGAAGAGC GCATGGAGCA GGAATTCCGA
AGCTTCCAGC GCCATAAGCA CCCCCTGTGG GTAGCAGTGG CCGACATAGA CCACTTCAAG
TCCATCAACG ATAACTTTGG CCACAGCACC GGCGATAAGA CTCTGCAGGT CATAGCCATG
GCGCTGAAGA ACTCGCTGCG GGATACTGAG TTCGTGGCCC GCTACGGTGG TGAAGAATTT
GTGCTGCTCA TCCCTGAAGT ATCAGATACT GACATAGTGC AACTGCTGAA CCGGGTGCGT
GAGAAAGTAA AAAATATTCC ATTTAAATTT AAAAATCAGA GAATTACAGT TACAGTATCC
ATAGGGGCCG CACGGGTAAT GGATAATGAG CTCATTCACG AAACCTTCGA GCGAGCTGAC
GCGGCCCTCT ACAAAGCCAA ACATGAGAGC AGAGACAGGG TGATTATCGA CTGCTAG
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| Protein sequence | MKDANEAISQ ITLLKQKLHS AKVALDELNE DRNAKLQTLL QFISNLSLAC KGQNLELDNR
LAKLRHQLTT YEKLDDALPD IVEVERLLKG QYHHVMAQLE DSRAGLGRVV RQIQRVESAP
DKLKKEVAYF KQDLSKPLHT VWEYIPKVEK LMAFYEEILS AQFNSGEPLA VLPKHRQLAH
ELAQIISEIE FRKDQRDQVL VIKEMLAGEI DVEGLMDAYQ TILSLLVDNI AREKSASQEF
LYALNDALSA VREVVSDSYN HTQRSHQLKH QLNREINSRV DNVGEAIVDI EDITTLKFQI
TEQLSSLRSA LSRKEALEQR EQALLRKSME TMRKELNELA EEASNYKERL FEQQKLNLLD
TLTQLPNRAA LEERMEQEFR SFQRHKHPLW VAVADIDHFK SINDNFGHST GDKTLQVIAM
ALKNSLRDTE FVARYGGEEF VLLIPEVSDT DIVQLLNRVR EKVKNIPFKF KNQRITVTVS
IGAARVMDNE LIHETFERAD AALYKAKHES RDRVIIDC
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