| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2401 |
|---|
| Symbol | |
|---|
| ID | 4604650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2884839 |
|---|
| End bp | 2886356 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781798 |
|---|
| Product | flavocytochrome c flavin subunit |
|---|
| Protein accession | YP_928275 |
|---|
| Protein GI | 119775535 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01813] flavocytochrome c |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAGA AAATCAAACA AAGCCGCCGC GCCTTCCTCA AGGGAGGTCT GGCACTGTCA
GCCGTTGGGC TGGCCCCCGC CGTGCTGGCC AAGTCCAGCG AAGATAACGC CATTCAGTGG
GATGAAACCT TTGACGTTGT CGTGGTAGGC AGCGGTTTGG CGGGCACCTG CGCCGCCATC
CGGGCAAAGG AAAATGGCGC CAAAAACACC ATTATTATTG AAAAAATGCC GGTACTGGGC
GGAACGTCTG CCATCTCAGG TCTGAACTTC TCCGTGGTCA ACAGTCACCT GCAACAGGCA
CAGGGGATTG AAGATTCTGC CGCACTTTTC GCCGAGGACA TCTCCAGGGC GGGCGGCTAT
CAGAACCACA GAGCGCTGAC CCTGAAAATG GCCGATACCA CCACCCGGGT ATTGCCCTGG
GCAATCGAGC GGGGTTGCCG TTTCCATGAC AAGTTAAAGA GCCTCGGCGG TCATTCGGTG
CCACGGACAC TTTATCCTGT CAATGGCGGT GGCAAAGGCA TACTGCGCCC GCTGCGTCGC
TTCTATACCC AGGACTTACA GGGCGACATC CGCCGCAGAG TCAAGTTTGA CAAGCTGCAT
CTGAATGCCC GGGGCGAGGT CATGGGGATT CAGGTACGCG AACAGTACTT TTTTGACCCA
AATCTGGGGA ATGACGACCG GGAAAACACC ACTGGCACCA TCAAACATTA TCGGGTGACC
AAGGGTGTGG TCATGGCCGT GGGCGGCTAC AGCCGCGATG TGGAGTTCCG TGCCATGGAG
TTTCCCAATA TTCGCGATTA CATCCCAACC ACCACTCACA GGGGCGCAAC CGCCGGTGCA
CTCAAGTCTC TGGTTGCAGC CGGTGCACAG ACAGTCCATC TGTCTTTGAT GCGCTTTGCC
TTTGATATCC CTACCGAAGA TTTGCAGTGG GGTGCCTTGG TCGACCCCAA AACGGGTCAG
CGCTTTATCA GCGAAAAGAA CAACCGCCAG GTCGTGGCAG AAGCCATCTG CAACATCATG
GACCGCAACG AGGGTCGCTT CCCGCTGAAT ATTTACGATC AGGATGGCAT CGACAACTTC
CACGACAAAC AGCGCCTGCA CCTCGCTTTG GAGGAAGGCA TGATGGTGAA GTACGACTCC
ATCGAGGCCC TGGCCAACGG GGAAGGCATC GATCTTACCG GGCTTGCGGC CACACTCAAG
CGCTATAACG AGGATGCCCT GTCAGGCAAA GACAGCCAGT TCGGTAAAGA CATGGCCGCG
TTGAAACAAG TGAGTGTCAA ACGAGCGCCT TTCTATGCCA TCAAGGCCCG TCCGAAATTC
AACTACACCC AGGGCGGCGT ATTAATCAAT GAAAATGCCC AGGTCATCAA CAGGGACACA
GCCCAACCCA TCAAAGGCCT TTATGCCTGC GGCGAAGCCA CGGGCGGGCT GTTCGGCCGA
ATTCGATTAA CTGCCTGCTC CTGCCCCGAT GCGTTCGCAT TTGGGGTGAT TGCCGGTGAA
CAGGTGGCCA AGGCCTGA
|
|---|
| Protein sequence | MNEKIKQSRR AFLKGGLALS AVGLAPAVLA KSSEDNAIQW DETFDVVVVG SGLAGTCAAI
RAKENGAKNT IIIEKMPVLG GTSAISGLNF SVVNSHLQQA QGIEDSAALF AEDISRAGGY
QNHRALTLKM ADTTTRVLPW AIERGCRFHD KLKSLGGHSV PRTLYPVNGG GKGILRPLRR
FYTQDLQGDI RRRVKFDKLH LNARGEVMGI QVREQYFFDP NLGNDDRENT TGTIKHYRVT
KGVVMAVGGY SRDVEFRAME FPNIRDYIPT TTHRGATAGA LKSLVAAGAQ TVHLSLMRFA
FDIPTEDLQW GALVDPKTGQ RFISEKNNRQ VVAEAICNIM DRNEGRFPLN IYDQDGIDNF
HDKQRLHLAL EEGMMVKYDS IEALANGEGI DLTGLAATLK RYNEDALSGK DSQFGKDMAA
LKQVSVKRAP FYAIKARPKF NYTQGGVLIN ENAQVINRDT AQPIKGLYAC GEATGGLFGR
IRLTACSCPD AFAFGVIAGE QVAKA
|
|---|
| |