| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2393 |
|---|
| Symbol | |
|---|
| ID | 4604642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2873783 |
|---|
| End bp | 2876383 |
|---|
| Gene Length | 2601 bp |
|---|
| Protein Length | 866 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781790 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_928267 |
|---|
| Protein GI | 119775527 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.228025 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.562058 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTT CAGTATTTGC CTGCGCCATT TCCGGTTTTG CCCTGTCAGC CCTGACCATC
GCCATGGCCC ACGCGGCCGA TGACGACAAG GCTATTTCAG CCGAATCCAA ACTCGAAAAA
ATCCAGATCA CCGGTTCACG CCTGAAAGGG GTGGACATGG AAGGGGCCAA TCCACTGCAG
TCATTCGATC AGGAAGAACT GGTCAAGCGG GGCTATGACA CCATTGCCGA ATTCCTCAAG
GACCTGCCCC AGGCGGCAAG TGCCGGCACC TTTACCGAAA CCGGTGGCGT GGGCGGCGCC
GATGGCGCGC CGGCAGGGGC TGCCGGGGTA AGTTTGCGTG GGCTGGGTTC AAGTTCAACG
CTGGTGCTGG TCAATGGTCG CCGGGTGGCG GTGGACTCCT TCTCCAATGG CTCTGACTCC
TTTGTGAACG TTAACGCCAT TCCCATGGCA GCCATTGAGC GCATCGATGT GCTGACCGAT
GGCGCTTCGT CCATTTATGG ATCAGACGCC ATCGCTGGAG TGATTAACTT TATTCTGCGT
AAGGATTTTG TCGGGCATGA ACTGACGGCC CAGTACGGTA ATGACACCAG TGACCATGAC
GCCAGTCGCA CCGGGCTGAC CTATGCCGGC GGCTTTGCCA CCGACAATAC CAACACCACA
GTGGTGCTGG ATTACGCCAA GCGCAACGCG ATTTTCAACA GCGATCGCCC CATCAAGGTA
ACTTACACCT CCTACACCGA GATGGTGATT GATGGCAATT ATTACGCCGA AGACTGGTGT
GGTGACGATA CCCGCTGGGG TGGTGAAGCC TGTAACTATG ACTACGTAAT CCAGCGCGCC
ATTCAACCGG ATTTTGAGAA CCTTGGCGCC ACCTTGAATC ATCAGTGGCA GCTGGACAAT
GACATGACCT TTTTTGCCGA GGCCATGTAT CAGCAAAACA CCGGCCATGC CTATGAAGCG
CCAGCAGGTT ACACGGTGAC AGTCCCGGGG GATGCGGCTT ACGTGCCTGG CTATGTGCGT
GACATCAACG CCGCAGACGG CGATGACAGC AACAGCATCA GGGTTCGTAC CCGTATGCCA
GAGCGCAGAA TTCAGGAATA CGATACCGAA AGCTATAGAG TTTTGGCCGG TCTTCGCGGC
GAGTGGGGCG ACTGGGGTTG GGAGTCAGCA GCAAGCTATG GCAAGTCCAC CAACGAAGTG
ACCCATGTGG CGGGCTATAT GAATCGCGAT GCCCTGGCCG ATGCCATTGC GAGCGGCAGT
TTCAACCCTT TTAACCTGGG GATGGACAAC AGTGAGGAGG CGATTGCGGC GCTGCGTGAC
AGTGCCATTC GCCGCGGTGA GTCTGAGGTG ATGTCCCTGG ATGCCAACAT CAGTGGTGAA
CTCTTTGAGA TGGATGCCGG TTTGGTGAGC GCCGTATTTG GCGCCGAACT TCGCAGTGAA
GAGATAGTGG ATAATCCGGC TGCATCAGCG GTAAACGACG ATGTAATAGG TCTTGGCGCC
AGTGATGCGG CCGCCGACAG GACCCAGTAT GCCCTGTATG GCGAGATTAA TCTGCCGCTG
TTTGAGGGAC TGGACCTGAT AACCGCGCTG CGGTACGACC ACTACAGTGA TTTTGGTGGC
GACATCAATC CCAAGGTATC GCTGCGCTAT AAGGCGACCG ACGATCTGGT GCTCAGAGCA
TCCTGGAGCA CGGGTTTCCG GGCACCGTCG CTTTCACAGC TCGGTGCAGG CACCTCCCTT
GGCAGTCAAT ACATTAACTG CGGCGCAGGT GAGCCTTTCA ATGCCCTGTG TGGCACCAAT
GGTGCCATCG ATGGTGAGCT GGAGTTCGAT CAGGAAACCA TAGGTAACAA GGGGTTGGAT
GCCGAATCTT CGGAAGCCAT CAACGCTGGA CTGTCGTGGA ATTTGACCGA CAACTGGCAG
CTTACCGTGG ATTACTGGCG CTACGATCAC GAAGACATAG TGGATATCGA TGCTTCCACC
ACTCTCAATG CCTGCGTAAA AGGCACTGCG CCTGTTGTGG GTTCAGTGAG CGAGCTTAAG
GGCGAGTTTG GTTGTGTAAT TGATGGCAAC GGCGATATCA GCTTCCTGCG TACCGGCTAC
TTTAACGTTG GCAGCCAAAC CACAGATGGT CTTGACTATC GCATGACCTA TCGTCTTGAG
ACAGCCGCGG CAGGTGAGTT CAGTTTCTAC GTCAGCGGCA CCGAAACCTT CAGCTTTGAG
CGTCAGGTGA CTCCGGATGC CGACGTAGAG GACCTCCTTG GCCGCTTGTC CGGTGCCAAC
GAAATCGCCC GACCTGAGCG GGTGCTGGAT GCCGGTACGG ACTGGAGCCT GGGTGATTGG
AGTGCCAGCC TCAGCGCTCA TTACGTCTCC AGCATGGGCG ATGGTGACTT CAGGTTTGAT
AACGAGACGG TGGACAGCTG GCTTACCTTC AGTGCCAGTG TGGGTGTGAC CCTGATGGAG
AATCACTCGC TGATGTTGTC GGTTCGTAAC CTTACCGATG AGGAGCCGCC ATACGCGTCG
TCGCCCACCA ATGGTTACGC CAGCTCGGCC CATGACTGGC TCGGTCAGCG CTGGAACCTG
CGTTATAGCC TGCGCTTCTG A
|
|---|
| Protein sequence | MKVSVFACAI SGFALSALTI AMAHAADDDK AISAESKLEK IQITGSRLKG VDMEGANPLQ
SFDQEELVKR GYDTIAEFLK DLPQAASAGT FTETGGVGGA DGAPAGAAGV SLRGLGSSST
LVLVNGRRVA VDSFSNGSDS FVNVNAIPMA AIERIDVLTD GASSIYGSDA IAGVINFILR
KDFVGHELTA QYGNDTSDHD ASRTGLTYAG GFATDNTNTT VVLDYAKRNA IFNSDRPIKV
TYTSYTEMVI DGNYYAEDWC GDDTRWGGEA CNYDYVIQRA IQPDFENLGA TLNHQWQLDN
DMTFFAEAMY QQNTGHAYEA PAGYTVTVPG DAAYVPGYVR DINAADGDDS NSIRVRTRMP
ERRIQEYDTE SYRVLAGLRG EWGDWGWESA ASYGKSTNEV THVAGYMNRD ALADAIASGS
FNPFNLGMDN SEEAIAALRD SAIRRGESEV MSLDANISGE LFEMDAGLVS AVFGAELRSE
EIVDNPAASA VNDDVIGLGA SDAAADRTQY ALYGEINLPL FEGLDLITAL RYDHYSDFGG
DINPKVSLRY KATDDLVLRA SWSTGFRAPS LSQLGAGTSL GSQYINCGAG EPFNALCGTN
GAIDGELEFD QETIGNKGLD AESSEAINAG LSWNLTDNWQ LTVDYWRYDH EDIVDIDAST
TLNACVKGTA PVVGSVSELK GEFGCVIDGN GDISFLRTGY FNVGSQTTDG LDYRMTYRLE
TAAAGEFSFY VSGTETFSFE RQVTPDADVE DLLGRLSGAN EIARPERVLD AGTDWSLGDW
SASLSAHYVS SMGDGDFRFD NETVDSWLTF SASVGVTLME NHSLMLSVRN LTDEEPPYAS
SPTNGYASSA HDWLGQRWNL RYSLRF
|
|---|
| |