| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2328 |
|---|
| Symbol | |
|---|
| ID | 4604578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2793695 |
|---|
| End bp | 2794876 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 639781726 |
|---|
| Product | UDP-N-acetylglucosamine 4,6-dehydratase |
|---|
| Protein accession | YP_928203 |
|---|
| Protein GI | 119775463 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.231358 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGAAC TCATCGGACG ACAAACCGAA CTTTTTGAAG CCGATCTCAA TGTACTGTCA
GAGCAACTGT CAGCCAGAGT ATCGGAAGCG TCCTTTCTTG TATTGGGTGG TGCCGGTTCA
ATTGGACAGG CAGTCGTCAA AGAAATATTC AATCGCCAAC CGAAAAAGCT ACATGTAATT
GATATTTCGG AGAATAACCT GGCAGAACTT GTCAGGGATC TTCGCAGTTC CTATGGTTAT
ATTCAGGGAG ACTTCCAAAC GTTTGCCTTG GATATAGGTT CTCTGGAATA CGATGCATTC
ATCAGACATG ACGGTAAGTA CGATTATGTC CTTAATTTGT CAGCACTGAA GCATGTTCGC
AGTGAGAAGG ACCCCTTCAC CCTGATGCGG ATGATAGATG TAAACGTGTT TAACACCGAC
AAAACCATCA AGCAATCAAT CGCATCAGGT GTAAAAAAGT ACTTTTGTGT ATCCACTGAC
AAAGCAGCAA ATCCGGTAAA TATGATGGGC GCATCCAAGC GCATCATGGA GATGTTTTTG
ATGCGCCACA GTGAGCAAAT CACGATTTCC ACTGCACGCT TTGCTAATGT GGCATTCTCA
GACGGCTCGC TGTTGCATAG CTTCAATCAA AGACTACAGA AGCAGCAGCC CCTGGTGGCT
CCCAATGACA TCAAGCGTTA TTTTGTGACC CCAAAAGAAG CGGGCTTACT CTGCCTCATG
TCATGTATCT TAGGAGAGAA TCGCGATATC TTTTTCCCGA AGTTAAATGA AGCGCTGCAT
CTGATGACCT TCGCAGATAT TGCGGTTAAA TACCTTTCAG CAAGGGGGTT TGAGCCGTTT
GAATGTCAAA GCGAAGACGA GGCAAGGCAG TTGGCGGCAA CCTTGCCAGC ACAGGGGAAA
TGGCCATGCT TTTTCACTGC CAGCGACACA ACCGGTGAAA AAGATTTTGA AGAATTCTTT
ATGGCGCATG AAACTTTGGA TATCACGCGT TTCCAGGACT TGGGGATCAT CAAAAACGAT
GCTGTTTACC AGCCCGAATT ACTGGACGAA TTTGAAATAC AGATCGAGCG AATGAAATCT
GCCGGGCAAT GGAGTAAGGC TGAACTGGTC GAAGTGTTCA CCAGGATGAT ACCTGACTTT
GGACACAAGG AAACCGGTAA GTACCTTGAC AGTAAGATGT GA
|
|---|
| Protein sequence | MLELIGRQTE LFEADLNVLS EQLSARVSEA SFLVLGGAGS IGQAVVKEIF NRQPKKLHVI
DISENNLAEL VRDLRSSYGY IQGDFQTFAL DIGSLEYDAF IRHDGKYDYV LNLSALKHVR
SEKDPFTLMR MIDVNVFNTD KTIKQSIASG VKKYFCVSTD KAANPVNMMG ASKRIMEMFL
MRHSEQITIS TARFANVAFS DGSLLHSFNQ RLQKQQPLVA PNDIKRYFVT PKEAGLLCLM
SCILGENRDI FFPKLNEALH LMTFADIAVK YLSARGFEPF ECQSEDEARQ LAATLPAQGK
WPCFFTASDT TGEKDFEEFF MAHETLDITR FQDLGIIKND AVYQPELLDE FEIQIERMKS
AGQWSKAELV EVFTRMIPDF GHKETGKYLD SKM
|
|---|
| |