| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2309 |
|---|
| Symbol | |
|---|
| ID | 4604559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2774308 |
|---|
| End bp | 2776224 |
|---|
| Gene Length | 1917 bp |
|---|
| Protein Length | 638 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639781706 |
|---|
| Product | flagellar hook-associated protein |
|---|
| Protein accession | YP_928184 |
|---|
| Protein GI | 119775444 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1256] Flagellar hook-associated protein |
|---|
| TIGRFAM ID | [TIGR02492] flagellar hook-associated protein FlgK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.133958 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATAG ATTTATTGAA CATCGCCCGG ACCGGGGTAC TGGCATCTCA GGCACAGCTC
GGGGTGACCA GTAACAACAT TGCCAATGTC AATACCGAAG GCTATAACCG CCAGGTTGCC
ACTCAGGCCA CTCACCTGTC ACAACGCTCC GGCAACAGTT TCTATGGCAC GGGAACCTAT
GTGTCCAGTG TCAAACGGGT GTACAACGAA TATGCTGCCC GCGAGCTGCG CATCGGCCAA
ACCGCAAAAG GTGCAGCCGA AGTCAGTCAC ACCAAGATGA GTGAACTCGA TCAGCTGTTT
TCCCAGATAG GCAAGGCTAT TCCCCAGTCG CTTAACGATA TGTTCAAAAA CATCAACAGC
CTGGCAGATT TGCCATCGGA TCTCGGCATC CGTGGCGGTG TGCTGGGTTC TGCTCAGCAG
ATGGCCAGCG CCATCAACGA GATGCAACGT CAGCTTGAAG GGCAGATGAA GCAAACCCAT
GAGCAGATTG ATGCCATCAC GACCCGCGTC AATGAAATCA GCACTGAGCT TGCCAATATC
AATCGTGAGC TGATGAAAAC CATGGGCGAA GACATGCAGC TACTGGACAA GCAGGATGCG
TTGATCATGG AGCTGAGTGA ATACGCTCAG GTGAATGTGA TACCGCTGGA AAACGGTGCC
AAAAGCATCA TGCTGGGCGG CGCTGTGATG CTGGTGTCAG CGGAAGTGGC TATGAGCATG
GGGACGGCCC AGGGTGACCC CTACTCAGAT GAACTCAGGC TCACCGCGAC GACAGGCTCT
TCCACGCTGG TTGTCGACCC GTCCAAGCTG GGCGGACAGC TCTCGGCCTT GTATGAATTC
AGGGATAAAA CCCTTATTCC GGCTGAAAAT GAACTGGGGC AGTTGTCGCT GGGTATTGCC
AATGCCTTTA ATGAGGCGCA GAAGGCCGGA TTCGACATGA ATGGTCAGGT TGGTAGCAAT
ATTTTCATCG ATATCAACGA CCCGCTCATC GCCCAGAGCC GTGTTGGCCA GTATGGGAGC
AATACGGGTA CTGCGTCCCT CAGCGTATCA ATAGAAGATG TGGGAGCACT TTCGGGGGGA
GCATACGAGC TCAAATACAC AGCTCCCGGC ACCTATGAAT TAACCGATAC CCTCACAGGC
GATGTGACGC CACTGACCTT AAGTGGTTCC ACCCTCACCG GTGGCGCTGG TTTTAATATC
AACATCGGCG CCGGTGCTTT TGCCGACGGT GACAGATTTC TTATCCGGCC GACATCAGGG
GCAGCTGCGC AGATGTCGGT GGTCATGACA GATCCCAAAG CCATTGCCGC AGCAGCGCCA
AAAATTACTG CCGATGCAAC CAATTCGGGT AACACCAAGG TTACAGTTAC CAGTATCGAC
AATCGTCTGG CAGCCAACTT CCCGGTTACC GGCAGCGAGC TGACTTTTAC CCTGAATACT
GGCGCCAATA CCTATGATGT GACCGCTGCT GACGGCACAG TGCTTGCGGC TGGTGTGGCC
TACACGCCGC CTTCTATCAG TGCTTTTGGC TTTACCTTTG AGGTGGAGTC CATTGGGGCT
GCCACTGACA GTTTTACCTT TGATTTGAGC TACGGTGAAG GCGACAACTC CAATGCGCTG
GCCATGGCAC AGTTGGCCGA CACCAAGCTG ATGAACGGCG GCAAGTCGAC CCTCATTGAT
GTGTTCGAAA AAACCAAACA GCAAATTGGC TCAGGCACCA AGGCTGCCGA AGTGCGTTTG
GGATCTGCCG AAGCCATTTA CCAGCAGGCC TATGGGCGGG TTCAGGAAGT TTCCGGGGTC
AACCTGGATG AAGAAGCGGC CAATTTGCTC AGGTTCCAAC AGTCATACCA GGCGTCGGCA
CGCATTATGA CCACGGCCCA GCAAATCTTT GACACCCTGT TTGCGTCGGT GCGTTAA
|
|---|
| Protein sequence | MSIDLLNIAR TGVLASQAQL GVTSNNIANV NTEGYNRQVA TQATHLSQRS GNSFYGTGTY
VSSVKRVYNE YAARELRIGQ TAKGAAEVSH TKMSELDQLF SQIGKAIPQS LNDMFKNINS
LADLPSDLGI RGGVLGSAQQ MASAINEMQR QLEGQMKQTH EQIDAITTRV NEISTELANI
NRELMKTMGE DMQLLDKQDA LIMELSEYAQ VNVIPLENGA KSIMLGGAVM LVSAEVAMSM
GTAQGDPYSD ELRLTATTGS STLVVDPSKL GGQLSALYEF RDKTLIPAEN ELGQLSLGIA
NAFNEAQKAG FDMNGQVGSN IFIDINDPLI AQSRVGQYGS NTGTASLSVS IEDVGALSGG
AYELKYTAPG TYELTDTLTG DVTPLTLSGS TLTGGAGFNI NIGAGAFADG DRFLIRPTSG
AAAQMSVVMT DPKAIAAAAP KITADATNSG NTKVTVTSID NRLAANFPVT GSELTFTLNT
GANTYDVTAA DGTVLAAGVA YTPPSISAFG FTFEVESIGA ATDSFTFDLS YGEGDNSNAL
AMAQLADTKL MNGGKSTLID VFEKTKQQIG SGTKAAEVRL GSAEAIYQQA YGRVQEVSGV
NLDEEAANLL RFQQSYQASA RIMTTAQQIF DTLFASVR
|
|---|
| |