Gene Sama_2289 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2289 
SymbolfliN 
ID4604539 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2754363 
End bp2754737 
Gene Length375 bp 
Protein Length124 aa 
Translation table11 
GC content54% 
IMG OID639781686 
Productflagellar motor switch protein 
Protein accessionYP_928164 
Protein GI119775424 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1886] Flagellar motor switch/type III secretory pathway protein 
TIGRFAM ID[TIGR02480] flagellar motor switch protein FliN 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.912954 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATACCG AAGACGATTG GGCCGCAGCA ATGGCCGAGC AGGCCCTGGA AGAAGCCAAG 
GCCGCCGAGT TTGAAGAGCT GAAAGATGAG ACCAAACCCC TGAGCAGTGA GGAGGCCGCC
AAGCTGGATG CCATTTTGGA CATTCCAGTG ACCATTTCTA TGGAAGTGGG GCGCAGCTAT
ATCAGCATCC GCAACCTGTT GCAGCTCAAT CAGGGCTCAG TGGTGGAGCT CGACCGCGTG
GCCGGTGAGC CGCTGGATGT GATGGTTAAC GGTACTCTGA TAGCCCACGG CGAAGTGGTG
GTGGTAAACG ACAAGTTTGG TATTCGCCTC ACTGACGTGA TAAGTCAAAC CGAGCGAATT
AAAAAGCTCA AGTAA
 
Protein sequence
MNTEDDWAAA MAEQALEEAK AAEFEELKDE TKPLSSEEAA KLDAILDIPV TISMEVGRSY 
ISIRNLLQLN QGSVVELDRV AGEPLDVMVN GTLIAHGEVV VVNDKFGIRL TDVISQTERI
KKLK