| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2265 |
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| Symbol | |
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| ID | 4604515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2730693 |
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| End bp | 2731196 |
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| Gene Length | 504 bp |
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| Protein Length | 167 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639781662 |
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| Product | transcriptional activator rfaH, putative |
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| Protein accession | YP_928140 |
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| Protein GI | 119775400 |
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| COG category | [K] Transcription |
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| COG ID | [COG0250] Transcription antiterminator |
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| TIGRFAM ID | [TIGR01955] transcriptional activator RfaH |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000106043 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00695369 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGGCTT GGTATCTCAT TTACTGTAAG CCCCGCAACG AAATGCGGGC ACAGCAGAAT
CTCTCCATGC AGAACCTCGA AACTTACCTG CCAAAGCATC GTAAGCAGGT AAAAGCGAGT
GGAGGAGCTG TATCTGTCTC TGAATCAGTG CTGTTTCCAA ATTATTTATT TGTTCAGTTT
GATCCCGAAG TCACCAGCGT AAGAAGCATA CACGCAACAC GTGGTGTGTC TCGCATTGTC
GGATGCAGCG AACAAATGAC TCCCATCGAT GATGCGTTAA TTCGTGCCCT CAAGCGTAAA
GAATTGCAGG TTGAAAAGCT TGCCTGTGAA AAGCCATTGG CAGCGGGCGA GCGGGTAAAG
TTTTGTGCCG GCCCCTTTTC TGACCTGGAA GCCATTTTCC TCGAATCGGA TGGTAACAAG
CGCTGTCAGG TGCTGTTTGA GTTTATGGGG CAGCAAAAGC AGCTCGACGT TGAGTCTTCA
AGTATCGTTC GTATATGTGC GTGA
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| Protein sequence | MKAWYLIYCK PRNEMRAQQN LSMQNLETYL PKHRKQVKAS GGAVSVSESV LFPNYLFVQF
DPEVTSVRSI HATRGVSRIV GCSEQMTPID DALIRALKRK ELQVEKLACE KPLAAGERVK
FCAGPFSDLE AIFLESDGNK RCQVLFEFMG QQKQLDVESS SIVRICA
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