Gene Sama_2228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2228 
Symbol 
ID4604478 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2691526 
End bp2693793 
Gene Length2268 bp 
Protein Length755 aa 
Translation table11 
GC content54% 
IMG OID639781625 
Productdecaheme cytochrome c 
Protein accessionYP_928103 
Protein GI119775363 
COG category 
COG ID 
TIGRFAM ID[TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.236086 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAAA ACTACAACAG ATCACTGCTG ACGATAGCAC TCCTCAGTGC TCTGACCCTT 
ACCGCATGCG GCGACGGTAA AGATGGTCAG GACGGCGCAC CTGGTACACC GGGCACTCCC
GGTACCCCAG GCGAACCTGG TAAACCAGGT ACCCCAGCCG GCTCGTTCGT AACCAGTGCA
GATAAAGCCG CCGATGTGAC TTTCGAAATA CTCCCAGCCG ACATCAACGT GGCTGGTTCA
GGTGACTTTG CGATTAAATT CAAAGCCATG GGCAAGAACG CTCAAGGCAG TTCAGTCCCC
TTCTCCGGAC TGGATATGGT CTCGCTCTAT TCAATGACCC TGGCGGCCAA CAGCTCTGGC
AGCGGCGCGC CACTGGAATG GGTGAACAAT GCCATGGTGC AGGACCTGGG CTCTTCCATG
TACTGTACTC TTACTGGCAC CTACAGCTCC CGTGGACAAA CAGGTAATGC GTGTATTCTG
GTGGAAGATG CCGACGAGCC CGGCACATAC ACAGGTACCT GGACCCATGA AGGCGCAGCG
CCCATCATGA ACCCCAATGA TGACCTCAAT GCCACTCACC GCTTGTTCCT GCGCGCATAT
AACGTGAAGG ACAGCGGTGG TACTGCGCTC TCTGACAAGG TGCTCTCTGA CCGACTGGAC
TACGTGCCAG CCACAGGTGC CATCGTTGAA GCCACAGGCA AAGACACTGT GACCGACGCA
GCCTGTATCA GCTGTCACGG CAACGTGGAC GGCCGTATTG CGAATATAGG CGCCCACCAC
AATTATCAAA GTGTGGAAAA CTGTATCGCC TGCCACAACC CCGACAACCA GCCCGATGAA
GATCAACTCG CCGAAGGTTG GCTGTTTGAT TTCGGCCCCA TGATCCACCG TATCCACGCC
GGACACCATA TCAGTGACTT CCTCTCAGGC GAAGCCAAGG AATACTTTGG CGAACTGGGT
TTCCCCGGCG AGCTGCGTGA ATGTACCAGT TGCCACAATA ACGGTCCTTC CTGGAGCAAT
AACCTGTACC GTCAGGCGTG CGTTGGCTGT CACATTAACG TTAACTTTGA AACCGGTGAA
GGCCACTCTG ATTTCGACTT GGCACAAGCC GACGATACTC AGTGTAAATC CTGTCACGCC
AGTGGCAGCT TGAGCCCAGC GATTGCGCAC AAGGTAGGCA ACAGGGCAAT TGAGCAAGAA
CAAGTCGTGC TTGATTTCCA AGGTGTGACA GTGACTGACA ACGGCGACGG CACCAGCGCA
CTCACTGTAA AAACTAAGGT GACTATCAAT GGTGCGACAC CTGCCGATGG CACTATGCTG
GATCCTTACA TGCCACGTCT GTCTACCGGT CTGCTAATTG GTAATGTTGA CACAGACGGC
AATCCAATAC GTGGATTGGG TATGCCTGTC AATGGCGTAG CAATGACAGG TGGTGTCCTG
ACAACGACCA AGAGCTTCCC GTCTTCGCGT CTGACAGGCT CTCTCTACGT GACTGCAGAA
GTGATGGTAT GCGGAGCGGG CGGTAAAGCC GTGATGTGTG CCAATGGCGA CTACACAGAA
GTATCTGCCA GCGCCCATGT TAAATACTAC AATCTGGATG ATCCGGACGC GGCAGCACTG
CAAGCACGAA TGAGCGACTT GGACCGCGTC ACCGTGAGCG AAGCCAAATG TAACAGCTGT
CACAATAACC TCACTCACAT TAAGGCACCA CGCCACGGTG TGAGCGAGTT TACCCAGTGT
ATGGATTGTC ACAACAACAG ATACCCTGGT TCATACCATG GCAATGTTGA ATACAACACT
GGCGAAGTTG ATGCCGATGG TAACCCAATC ATGGCAACTG TTGAAGGGTT AACCTACAGC
AACCGCGACC TCATGACAGT GGCACACCGC TTCCACTCTG GAACATTCGG TGGTGGCATT
TACCTCGATA AAAACATGGA AACTGTTGGT TACCCTGCCC CAGCGACAGA CTGCAGCGTA
TGTCACAAAG ACGATGCCAA CTTCTTCGCC AACGACGGTG GTTTAACCTC AGGTAAGCGT
TCAATTCAGG TCACCTCCAC AGAGTACATT ACCCCTGTGG CCGAAGCCTG CCGTACTTGC
CACGCTCACT CAGATGGCGC CGCACTGGCC CACTTCAAGA GCAATGGTGC TTACGTTCAG
GGTGAACCTG CAACCACCAG CAACCTGCCG GTAGAAAGCT GCGCCACCTG TCACGCAGAG
GGTAAAGCTT ACGGTATCGA TAAGGTGCAC GCAGAGGCCT CTCACTAA
 
Protein sequence
MMKNYNRSLL TIALLSALTL TACGDGKDGQ DGAPGTPGTP GTPGEPGKPG TPAGSFVTSA 
DKAADVTFEI LPADINVAGS GDFAIKFKAM GKNAQGSSVP FSGLDMVSLY SMTLAANSSG
SGAPLEWVNN AMVQDLGSSM YCTLTGTYSS RGQTGNACIL VEDADEPGTY TGTWTHEGAA
PIMNPNDDLN ATHRLFLRAY NVKDSGGTAL SDKVLSDRLD YVPATGAIVE ATGKDTVTDA
ACISCHGNVD GRIANIGAHH NYQSVENCIA CHNPDNQPDE DQLAEGWLFD FGPMIHRIHA
GHHISDFLSG EAKEYFGELG FPGELRECTS CHNNGPSWSN NLYRQACVGC HINVNFETGE
GHSDFDLAQA DDTQCKSCHA SGSLSPAIAH KVGNRAIEQE QVVLDFQGVT VTDNGDGTSA
LTVKTKVTIN GATPADGTML DPYMPRLSTG LLIGNVDTDG NPIRGLGMPV NGVAMTGGVL
TTTKSFPSSR LTGSLYVTAE VMVCGAGGKA VMCANGDYTE VSASAHVKYY NLDDPDAAAL
QARMSDLDRV TVSEAKCNSC HNNLTHIKAP RHGVSEFTQC MDCHNNRYPG SYHGNVEYNT
GEVDADGNPI MATVEGLTYS NRDLMTVAHR FHSGTFGGGI YLDKNMETVG YPAPATDCSV
CHKDDANFFA NDGGLTSGKR SIQVTSTEYI TPVAEACRTC HAHSDGAALA HFKSNGAYVQ
GEPATTSNLP VESCATCHAE GKAYGIDKVH AEASH