Gene Sama_2194 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2194 
SymbolqueA 
ID4604444 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2652619 
End bp2653656 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content55% 
IMG OID639781579 
ProductS-adenosylmethionine:tRNA ribosyltransferase-isomerase 
Protein accessionYP_928069 
Protein GI119775329 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0809] S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 
TIGRFAM ID[TIGR00113] S-adenosylmethionine:tRNA ribosyltransferase-isomerase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.734639 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0553646 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAGTAG CTGACTTTAC CTTTGATCTT CCCGATGAAC TGATTGCCCG CTATCCCATG 
GCAGAGCGCA CCGCGTCGCG TCTGTTGCAT CTGGACGGCA GCACTGGTGC CTTGGCCGAT
CGTCAGTTCA CCGATATTCT GGCGCTGATT GAGCCGGGCG ATCTGATGAT TTTCAATAAC
ACCCGGGTGA TACCGGCTCG TCTCTTTGGC CAAAAGGCAA GCGGCGGCAA GTTGGAGATC
CTGGTGGAGC GTATGCTTGA TGACAAGCGC ATTTTGGCCC ATGTTCGCTC GTCCAAATCC
CCCAAACCCG GCGCCGAGAT TATCCTGGAC GGCGGCTTTA AGATGACGAT GGATGCCCGT
CATGATGCAC TGTTTGAGCT GTCGCTCAAG GATGATAAGA CCATCCTCGA AGTGCTTGAA
GCCGTAGGCC ATATGCCGCT GCCGCCTTAT ATCGATCGCC CCGATGAAGA TACCGACAAA
GAGCGTTATC AAACCGTCTA TAACGAGCGC CCCGGCGCCG TTGCGGCTCC TACTGCCGGT
CTTCACTTCG ATGAAAGCAT ACTCGCCGCC CTCAAAGCCA AAGGTGTGGA CATGGCATTT
GTGACCCTGC ACGTGGGAGC GGGTACCTTT CAGCCGGTGC GGGTAGACAA CGTGCTCGAG
CACAAAATGC ATTCAGAATG GGCCGAAGTA CCTGCCGATG TGGTTGAAAA AATCCGCGCC
ACCAAGGCCG CAGGTAAGCG GGTGATTGCC GTGGGGACCA CCTCAGTGCG CTCCCTCGAG
AGTGCCGCCA AGGCAAGTGA GGGTGAACTC GAGCCATTTT GCGGTGATAC CGATATCTTT
ATCTTCCCCG GTTTCGAGTT CAAAGTAGTC GATGCCATGG TGACCAACTT CCACCTGCCG
GAGTCGACAC TCATCATGCT GGTGAGCGCC TTTGCCGGCT TCGATGAGGT AATTGGCGCC
TATCGCCATG CAGTTGAACA AAAATACCGC TTTTTCAGTT ATGGCGATGC CATGTTTGTG
ACTAAAAAAG CCCCCTAA
 
Protein sequence
MRVADFTFDL PDELIARYPM AERTASRLLH LDGSTGALAD RQFTDILALI EPGDLMIFNN 
TRVIPARLFG QKASGGKLEI LVERMLDDKR ILAHVRSSKS PKPGAEIILD GGFKMTMDAR
HDALFELSLK DDKTILEVLE AVGHMPLPPY IDRPDEDTDK ERYQTVYNER PGAVAAPTAG
LHFDESILAA LKAKGVDMAF VTLHVGAGTF QPVRVDNVLE HKMHSEWAEV PADVVEKIRA
TKAAGKRVIA VGTTSVRSLE SAAKASEGEL EPFCGDTDIF IFPGFEFKVV DAMVTNFHLP
ESTLIMLVSA FAGFDEVIGA YRHAVEQKYR FFSYGDAMFV TKKAP