| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2190 |
|---|
| Symbol | secF |
|---|
| ID | 4604440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2648150 |
|---|
| End bp | 2649097 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781575 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | YP_928065 |
|---|
| Protein GI | 119775325 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.447622 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00319916 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCAGA TTTTAGATAT TAAAGGCTCC ATCAATTTCT TACGACACGC TGCGCCCATC
AGTATCCTGT CTGCCATTTT GGTGGTGGGT TCGCTGGTGT CGCTGGCGAC GCGTGGCATT
AACTGGGGTC TGGACTTTAC CGGTGGCACC GTGGTGGAGA TGGAGTTCTC CAAGCCGGTT
AATCTCGAGA CACTGCGCAA CAACCTGACC GAGCCTCTCG TTGCCGGCGC CGTGGTACAG
AACTTCGGTT CGAGCCGTGA CGTGCTGGTG CGTCTGCAGG TACGTGAAGG CGTGAAGAGT
GACGCCCAGG TGCGTGTTGT CATGGCCAAA GCCACAGAAC TCGACCCCGA AGTTACCCAG
AAACGGGTGG AATTTGTCGG TCCGCAGGTG GGTAAGGAAT TGGCAGAGCA GGGCGGCCTC
GCGGTACTGG TGGCGCTTAT CTGTATCCTT ATTTACGTGT CGTTCCGCTT CGAGTGGCGT
CTTGCCGCAG GTTCGGTAGC CGCACTGGCT CACGACGTTA TCGTGACCCT GGGCGTGTTC
TCTGTGCTGC AGCTGGAGTT TGACCTCACG GTATTGGCGG GTCTCTTGAC CGTTGTGGGT
TACTCGCTAA ACGACACTAT CGTGGTATTC GACCGCATCC GTGAGAACTT CCTCAAGATG
CGTAAGGGCA CCCCGGAAGA GGTGGTCAAC AACTCCATCA CCCAGACGAT GAGCCGTACC
ATCATTACGA CAGGTACCAC GCTCATTACC GTGGTGGCCT TGTTCCTCAA GGGCGGCACC
CTTATTCACG GCTTCGCCAC GGCGCTGCTG CTGGGTATTG TGGTGGGTAC CTATTCGTCT
ATCTACGTGG CGAGTTATCT GGCCATTCGT CTTGGCATCA ACCGTGAGCA CATGATGCCG
GTAGAAGTCG AGAAGGAAGG CGCCGACCAG CCTTCCATTA TGCCTTAA
|
|---|
| Protein sequence | MFQILDIKGS INFLRHAAPI SILSAILVVG SLVSLATRGI NWGLDFTGGT VVEMEFSKPV
NLETLRNNLT EPLVAGAVVQ NFGSSRDVLV RLQVREGVKS DAQVRVVMAK ATELDPEVTQ
KRVEFVGPQV GKELAEQGGL AVLVALICIL IYVSFRFEWR LAAGSVAALA HDVIVTLGVF
SVLQLEFDLT VLAGLLTVVG YSLNDTIVVF DRIRENFLKM RKGTPEEVVN NSITQTMSRT
IITTGTTLIT VVALFLKGGT LIHGFATALL LGIVVGTYSS IYVASYLAIR LGINREHMMP
VEVEKEGADQ PSIMP
|
|---|
| |