| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2180 |
|---|
| Symbol | |
|---|
| ID | 4604430 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2636912 |
|---|
| End bp | 2637628 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639781565 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_928055 |
|---|
| Protein GI | 119775315 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2859] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000000267555 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0119048 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAGC CTCTTACTCC CGCCGCCCTG GTGCTGGGCG CTTTCCTGGC TGGCGGTCTG
GGATTTATCG GACACAGCAT TACTGAAGCC GCCACCAATT TAAAAGCCCT TGACCGCACG
GTCAGCGTCA AGGGGCTGGC CGAGCAGGAG GTGATGGCCA ACGTAGCCAT CTGGCCAGTA
CGTTTTGCCG AAGTCGACAA CGATTTGGCA AGCCTCTACA ACACAGTGCA GCAAAAAACC
GACAAGGTGG TGGCCTTTTT AAAAGCCCAG GGGTTCAGCG ACGATGAAAT CACCCTGACA
ACACCTGCTA TCGAAGACAG AAGCACCCAG GGCTACTCCG ACCCCAACCT CAAATATCGC
TACGCAGCCA GAGTCACTGT CTCGCTCTAT ACCCATCAGG TCGATAAATT GCTACAAGCC
CGAAAACACA TCGGCGTGCT CGCCCGTGAT GGCATCGCCA TTGGCGGCAA CGAATACGAA
TCCCGCAGCG AGTTCTTATT CACTGAGCTC AACCGCATCA AACCGGCCAT GGTGCAACAG
GCCACCGAAA ACGCCCGGGA AGTAGCCGAG AAATTTGCCA GGGACTCAAG CTCAAGCCTT
GGCAAAATCA AAACCGCCAG CCAGGGGCAA TTTATCATCA CTGACAGGGA CAGTAATTCG
CCCCATATTA AAAACGTGCG AATTGTCAGT ACGGTTACCT ATTATTTAAC TGACTGA
|
|---|
| Protein sequence | MDKPLTPAAL VLGAFLAGGL GFIGHSITEA ATNLKALDRT VSVKGLAEQE VMANVAIWPV
RFAEVDNDLA SLYNTVQQKT DKVVAFLKAQ GFSDDEITLT TPAIEDRSTQ GYSDPNLKYR
YAARVTVSLY THQVDKLLQA RKHIGVLARD GIAIGGNEYE SRSEFLFTEL NRIKPAMVQQ
ATENAREVAE KFARDSSSSL GKIKTASQGQ FIITDRDSNS PHIKNVRIVS TVTYYLTD
|
|---|
| |