| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2178 |
|---|
| Symbol | |
|---|
| ID | 4604428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2635010 |
|---|
| End bp | 2636332 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639781563 |
|---|
| Product | aromatic hydrocarbon degradation membrane protein |
|---|
| Protein accession | YP_928053 |
|---|
| Protein GI | 119775313 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2067] Long-chain fatty acid transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000636439 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0847993 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAA GAGAAGAGAC GATGAAGTAC TTCAACAAGA CACTGCTTGC AGCCGCCATT
GGTTTGGCAA GCACCCAAAC CCTGGCTGCC GGTTTTCAAC TCAACAGTCA CTCTGCCACC
GGTGTTGGCC GCGCCATTTC CGGTGATGCC GTTATTGCCG ACAACGCCTC CGTGTTGTCC
CGTAACCCAG CTGCCATGGC GCTGTTTGAC AACACAGCCC TGTCTCTGGG CGTGACCTAT
GCCGACATCG ATGTGAGTGT AAAAGATGTC TGTAAAGCCG GTACCCCTAT TTGTTTCGGT
AGCGACACCG ATGCTGCGGA AGATAAAATC ATCCCCAATT TCTATTACAT CAACCCCATT
AACGATAAAT GGGCCTTTGG TGTAGCCGCC TTCTCCAACT TCGGCACAGG TACCGATCCT
GGCGCTCTGG CCAACAATGC AGTCACTCTG CCTGGCCTTG GTACCATTCC TGCGCCAGTT
GACCTGCTGG GTAACACAGA AGTTATCACC ATGAACCTGA ATGCCAGCCT GTCATATCGT
GTAAACGAAC AGCTGAGCCT GGGCGCCGGT GTGGATGTGA TTTACGGCCA GGGCACCCTG
ACCCGTAAAG GCAACCTGCC TTTTGGCCCG AACGGTGAAA TGGTGCCGGT AAGTCTGGTG
AACGTGGATG CCGACGGTTG GGCACTGGGC GGGATCCTGG GCGCGGTGTA TGAATTTAAT
GCAGACCACC GTTTAGGGGT GAGCTACAGA TTCAGCCCCG AGTTTAAAGC CAGCGGCGAT
GTGCAGACGT TGGTGCCACA GGCTCAGGCG TATGCCAACT TTGATGAGAT TGTTATTCCG
CTGCCGGACA TTTTCCAGGT GGCCGGTTTC CACCAGCTGA CCGAAAAGTT TGCCCTGCAC
TATACGGCGC AACTGACTTC CTGGGGCGAT TTCAAAGAGA TCACCCTCGA AAATGGCACT
CTGGGCCAGA CCAGCATTCC GTCTTCTCAG CTCAAGCACT ATGCCTGGGA TGACTCTTGG
CTGTTCAGCA TCGGTGGTAC TTATCAGCTG TCTGATGCCT GGACACTGCG TGCTGGCTAC
ATGCACGATC AGGGTGTAGT GGATGAGATC AGCTCGATTT CTATCCCTGA TTCAGATCGC
AACTGGTACA CCCTTGGCGC AAGCTATGCA CTGTCTGCCA ATGCCACCCT GGATCTGGGG
GTAGCACTGG TACGCGGTGA AGACACCCAG GTGCTGGAGC AAAGCGCCAT TATCGGTGAC
GTGATTGCCC ACACCCGCTC CAACGCCGTG TACTATTCAC TGCAGTACAA CTACAAGTAC
TGA
|
|---|
| Protein sequence | MTTREETMKY FNKTLLAAAI GLASTQTLAA GFQLNSHSAT GVGRAISGDA VIADNASVLS
RNPAAMALFD NTALSLGVTY ADIDVSVKDV CKAGTPICFG SDTDAAEDKI IPNFYYINPI
NDKWAFGVAA FSNFGTGTDP GALANNAVTL PGLGTIPAPV DLLGNTEVIT MNLNASLSYR
VNEQLSLGAG VDVIYGQGTL TRKGNLPFGP NGEMVPVSLV NVDADGWALG GILGAVYEFN
ADHRLGVSYR FSPEFKASGD VQTLVPQAQA YANFDEIVIP LPDIFQVAGF HQLTEKFALH
YTAQLTSWGD FKEITLENGT LGQTSIPSSQ LKHYAWDDSW LFSIGGTYQL SDAWTLRAGY
MHDQGVVDEI SSISIPDSDR NWYTLGASYA LSANATLDLG VALVRGEDTQ VLEQSAIIGD
VIAHTRSNAV YYSLQYNYKY
|
|---|
| |