| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2062 |
|---|
| Symbol | mnmA |
|---|
| ID | 4604312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2497940 |
|---|
| End bp | 2499073 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639781439 |
|---|
| Product | tRNA-specific 2-thiouridylase MnmA |
|---|
| Protein accession | YP_927937 |
|---|
| Protein GI | 119775197 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
|---|
| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000391472 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCAA CTACAGCTTC TCCCGCTGAA ATCGCTGCCA ACAGCAGCAA AAAAGTCATT
GTCGGCATGT CCGGCGGTGT GGACTCTTCT GTCTCTGCGT ACCTTTTGAA ACAACAGGGG
TATCAGGTTG AAGGCCTGTT CATGAAAAAC TGGGAAGAAG ATGACACCGA CGAATACTGC
GCCGCCGCTG AAGATCTGAA AGATGCTCAG GCCGTGTGCG ATAAGCTCGG CATCAAGCTG
CATACAGTGA ACTTTGCCGC CGAGTATTGG GATAACGTGT TTGAGTACTT CCTCGCCGAA
TACAAGGCCG GCCGTACCCC AAATCCCGAC ATCATGTGCA ACAAGGAAAT CAAATTCAAA
GCCTTCCTTG AATTTGCGGA TGACATCCTC GATGCCGATT ACATCGCCAT GGGCCACTAC
GTGCGCCGCC GCGACACAGA CGGTAAAACC GAAATGCTGC GCGGCATCGA TGGCAATAAA
GATCAAAGCT ACTTCCTGTA CACCTTAAGC CACGAGCAGG TTGCCCGCAG CCTGTTCCCT
GTTGGCGAAC TGGAAAAGCC AGAAGTACGC CGTATCGCCG AAGAGCAAGG GCTTATCACC
CACGATAAGA AAGATTCCAC CGGTATCTGC TTTATTGGAG AGCGCAAGTT TAAAGACTTC
CTCGCTACCT ACCTGCCCGC CCAACCCGGT AACATCGAAA CGCCTGAAGG CGACATCATT
GGCCGCCATG AAGGCCTGAT GTATCACACC CTCGGCCAGC GTAAAGGCTT AGGGATTGGC
GGCATGAAAA ATTCAAACGA CGATCCCTGG TATGTGGTTG ACAAAGACAT GGCCCGTAAC
GTGTTGGTGG TGGCACAGGG CCACGAGCAT CCACGGTTGA TGTCAAAGGG CATGCGCGTT
AACCAGCTGC ACTGGGTTGA CCGTACTGGC CCGGCAGATG GCGCAACCAT CAGCGTGAAA
ACCCGTTATC GCCAGCAGGA CATCCCCTGC ACCGTGAAGA TTATCGATGA GCAAACCATC
GAAGTGCTGT TTGATGAGCC GGTGGCCGCC GTCACCCCCG GTCAGTCAGC GGTGTTTTAC
GATGGCGAAG TCTGCCTCGG CGGCGGCATT ATCGACACCC TGATAAAGGA CTGA
|
|---|
| Protein sequence | MTSTTASPAE IAANSSKKVI VGMSGGVDSS VSAYLLKQQG YQVEGLFMKN WEEDDTDEYC
AAAEDLKDAQ AVCDKLGIKL HTVNFAAEYW DNVFEYFLAE YKAGRTPNPD IMCNKEIKFK
AFLEFADDIL DADYIAMGHY VRRRDTDGKT EMLRGIDGNK DQSYFLYTLS HEQVARSLFP
VGELEKPEVR RIAEEQGLIT HDKKDSTGIC FIGERKFKDF LATYLPAQPG NIETPEGDII
GRHEGLMYHT LGQRKGLGIG GMKNSNDDPW YVVDKDMARN VLVVAQGHEH PRLMSKGMRV
NQLHWVDRTG PADGATISVK TRYRQQDIPC TVKIIDEQTI EVLFDEPVAA VTPGQSAVFY
DGEVCLGGGI IDTLIKD
|
|---|
| |