Gene Sama_2052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2052 
Symbol 
ID4604302 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2488462 
End bp2488929 
Gene Length468 bp 
Protein Length155 aa 
Translation table11 
GC content55% 
IMG OID639781429 
Producthypothetical protein 
Protein accessionYP_927927 
Protein GI119775187 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3133] Outer membrane lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.76746e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.361668 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGGAAAC CTGCACTCTA TTGTCTGGTG CTTTTGACAG CATGTTTCTC AGGCTCGGTC 
TGTGCCGGTT ACGAGAGAAA TCAGGCGATG CCGGTGGAAA AAGTACTTTA TGGTGAGGTT
ATCTCAGTGC GTCGACTGAC CCAGCAGGAA TTGGTGGCTG ACAAGCATCG TGGCTGGCGA
ACCTTTGGGG GCGCTTTGCT CGGCGGCGTG ATTGGCCATC AGTTTGGGGG CGGCTCAGGA
CAGGATGTGG CGACAGTCCT CGGGGCCCTG CTTGGCGGGG TGATTGCCAA TCAGGCCGGA
GGCGACAGTT ATCGTGAGCT TCGTCTGATT GAGCTGATGA TCCGTCAGGA AGACGACACG
CAAATCATGA TTTTGCAGGA CGAAGACTCA GGCATGCCCT TCAAGGCTGG TGATGAGGTG
CGCGTGGTAT ACCTTCAGGG CATGGTCAGA GTCGATAAAG CCATGTGA
 
Protein sequence
MWKPALYCLV LLTACFSGSV CAGYERNQAM PVEKVLYGEV ISVRRLTQQE LVADKHRGWR 
TFGGALLGGV IGHQFGGGSG QDVATVLGAL LGGVIANQAG GDSYRELRLI ELMIRQEDDT
QIMILQDEDS GMPFKAGDEV RVVYLQGMVR VDKAM