| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2043 |
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| Symbol | tmk |
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| ID | 4604293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2479863 |
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| End bp | 2480489 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639781420 |
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| Product | thymidylate kinase |
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| Protein accession | YP_927918 |
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| Protein GI | 119775178 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0125] Thymidylate kinase |
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| TIGRFAM ID | [TIGR00041] thymidylate kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.745773 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGCAGA ATCCCGGTAA ATTCATTGTG ATTGAGGGGC TTGAAGGCGC AGGTAAGTCC
AGTGCCATCA CACTGGTACA TGACTTTATC GAGAAGCACA CCGGCATGGC ACCAGTGTGC
ACACGGGAGC CCGGTGGCAC GCCGCTGGCG GAAAAAATCC GCGACCTTGT GAAAAATGCC
GAGCCTGGCG ATCCTCTCTG TGATGAGGCC GAATGTTTGC TGTTTTACGC GGCCCGTGCT
CAGTTGGTGG CAAACGTCAT CAAGCCCTCG CTGGCATCGG GTCGTTGGGT ACTGGGAGAC
AGACACAATC TATCGTCCAT CGCTTATCAG GGCGGTGGCC GCGGGTTGAT GTCTTTGGTC
AAAACCATCA GTGACGCCAC CCTGGGCGGA TTTAAGCCGG ATCTGACGCT TTATCTCGAT
ATAGATCCCT TGCTGGGACT GGAGCGCGCT GCCCGTCGCG GCGCTCTGGA CAGGATAGAG
CAACAGGAAA TTGACTTTTT TCACCGCGCA CGAGCGACCT TTCTTGCTCA GGCGAGGGAT
GACAGCTCCA TAGTGGTAAT TGACGCTTCC AAGCCGCTTA ACGAGGTACA CAAGGACATT
CTTGCCTGCT TAAGCACAGC CCTGTAG
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| Protein sequence | MTQNPGKFIV IEGLEGAGKS SAITLVHDFI EKHTGMAPVC TREPGGTPLA EKIRDLVKNA
EPGDPLCDEA ECLLFYAARA QLVANVIKPS LASGRWVLGD RHNLSSIAYQ GGGRGLMSLV
KTISDATLGG FKPDLTLYLD IDPLLGLERA ARRGALDRIE QQEIDFFHRA RATFLAQARD
DSSIVVIDAS KPLNEVHKDI LACLSTAL
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