| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2042 |
|---|
| Symbol | |
|---|
| ID | 4604292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2478933 |
|---|
| End bp | 2479847 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639781419 |
|---|
| Product | DNA-directed DNA polymerase |
|---|
| Protein accession | YP_927917 |
|---|
| Protein GI | 119775177 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0470] ATPase involved in DNA replication |
|---|
| TIGRFAM ID | [TIGR00678] DNA polymerase III, delta' subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCCA TTCCCTGGCT TTCCCAGCCT TTGGCCGATT TTACGGCGCT GCTAACCGCC
GGGCGCATGC CCCATGCGGT GTTGGTGGGT GTGGATGAAG GGCTGGGCGC ATCGATGCTG
GTTAATCAAC TTGCCCAAAC AGCACTCTGC ACCTCTCCCA ATGTGTCTGG ACCCTGTGGC
CAATGTAAAA GCTGTCAGTT ATTCAGTGCG GGAAATCATC CGGATTTTTA CCCCATCAAA
GCCGATGGGA CTCAAATTAA AATCGATCAA ATCCGTGAAC TCATTGCCCG TCTTTCGAGC
ACCGCCCAGC AAGGTGGCAG GCGGGTAGCC ATCATTGAAG CGGCTGAGCG CATGAATACC
GCGTCTGCCA ATGCGCTGTT GAAAACCCTG GAAGAGCCAG GTGCCAACAC CCTGATTTTA
TTGCACAGTA ACACGCCTGC ACGCTTGCTT CCCACCTTGC AGAGTCGCTG TCAAAAGTTG
GCGTTTGTGG CACCTAACCA ACGCCAGATC GCGGCCTGGC TGGCTCAGCA GGGGCTTGGC
ACAGACGCTC TCTGGTGTTT GCCTGTGGTG GGTGGCCCCA TCAAATTGGC AGAGTACTTG
CAAAACAATT ACATAAGCGT ACTTGAAAAC ATCAGAAAAG ATTGGCGAAG CAGTTTGTCG
ACGGGCCATC TGTGTGCTAG CTTGAAAGAA ATTGCCGAAG ACCAAATAAC TGATGCTCTT
AAGGTTTTGT ACGTTGAATT GATGGCCTAC CTCGCTGCAG CAGCAAAAGA GGATCCGCTT
TTGGCATCAC GGCTGGCAGG ATTGGCTGGT GAAGTTATGA GCGTTTGTCA TACGTTAAGT
ACTATGCCGA GCGTCAATTA TCTGGCACTA TGTCAAAAGA TTGTTTCAGA ATATCAGAGA
ATAAAAGAAA ACTAG
|
|---|
| Protein sequence | MTAIPWLSQP LADFTALLTA GRMPHAVLVG VDEGLGASML VNQLAQTALC TSPNVSGPCG
QCKSCQLFSA GNHPDFYPIK ADGTQIKIDQ IRELIARLSS TAQQGGRRVA IIEAAERMNT
ASANALLKTL EEPGANTLIL LHSNTPARLL PTLQSRCQKL AFVAPNQRQI AAWLAQQGLG
TDALWCLPVV GGPIKLAEYL QNNYISVLEN IRKDWRSSLS TGHLCASLKE IAEDQITDAL
KVLYVELMAY LAAAAKEDPL LASRLAGLAG EVMSVCHTLS TMPSVNYLAL CQKIVSEYQR
IKEN
|
|---|
| |