| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2002 |
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| Symbol | |
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| ID | 4604252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2431772 |
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| End bp | 2432416 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639781379 |
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| Product | sortase (surface protein transpeptidase)-like protein |
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| Protein accession | YP_927877 |
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| Protein GI | 119775137 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
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| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.030888 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.212613 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGCGGC TTAGATTTGG GCCCCGACAC CGCAGACGCT GGCCCTTGTT GCTGTTGTTA
TCGGGAGTTG TTCTTATCAG TTTTGGAGGA TATATGCAGG CAAAAGCATT ACTTGCCCAG
TACCTGATTG CCAGTGCCTG GGAGCAGAGT CTTAAAGACG GCTTACCCCA TAAACCCTGG
GGCTGGGCCG ATACCCACCC CATTGCGCGC TTGGAGCTCA GACGCGCAGG GGAAAGCAGC
GAAAGTTTTT ACATTCTGGC GGGGGCCAAT GGTCGTAACC TGGCTTTTGC CCCAAGCTGG
CTGGAAGACA CTGCCGCTCC CGGCGCTGGT GGCAATACTG TGATTGCCGG GCACAGGGAT
ACCCATTTTG CCATTTTGCG TGAGGTGGAG CCGGGGGACG AACTGCTGCT GGAGAATATG
CACGGTGAAT TGCAGCAGTA TCGGGTGAAA TACACCTCCG TGGTGTCGGA GCGGGAACTA
TCAGTGCTGG AGCAGGTGAC CGACAGGTTA ACCCTTATTA CCTGTTATCC CTTTTATGGT
TTAAGCGACA GAGCCAATGA GCGATTTGTT GTGGTGGCCG AGCCGGACGA CCTGTGGAGT
CGCCCGGATA CGGCAGCAAA GGCCATGGTG GTCAGCCTGA GATAG
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| Protein sequence | MKRLRFGPRH RRRWPLLLLL SGVVLISFGG YMQAKALLAQ YLIASAWEQS LKDGLPHKPW
GWADTHPIAR LELRRAGESS ESFYILAGAN GRNLAFAPSW LEDTAAPGAG GNTVIAGHRD
THFAILREVE PGDELLLENM HGELQQYRVK YTSVVSEREL SVLEQVTDRL TLITCYPFYG
LSDRANERFV VVAEPDDLWS RPDTAAKAMV VSLR
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