| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1993 |
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| Symbol | rbgA |
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| ID | 4604243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2423727 |
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| End bp | 2424671 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781370 |
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| Product | ribosomal biogenesis GTPase |
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| Protein accession | YP_927868 |
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| Protein GI | 119775128 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1161] Predicted GTPases |
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| TIGRFAM ID | [TIGR03596] ribosome biogenesis GTP-binding protein YlqF |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0543739 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.136959 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATTC AATGGTATCC GGGACACATG CACAAGGCAC AAAAGGAAAT TGCCGAAGCC
ATGCCCCAGG TCGATTTGGT GATAGAGGTA CTGGATGCCC GCATTCCCTA CTCCAGCGAA
AACCCCATGG TTGCCAAACT TCGCGGTGAC AAACCCTGTA TTAAACTGCT GAACAAATGC
GATCTTGCCG ATCCGGCCAT CACAGAGGCC TGGATAGCAC ACCTTGAAAA AGAACAAGGT
GTGAAGGCCA TGGCCGTCAC CACCTTACAG CCCGGTCATC TTAAAACGGT TATTCCTGAA
CTTGTGCGCA AGTTGGTGCC TGAGCGTGAC CGCGCGGACA AAGACATACG CACCATGATT
ATGGGGATCC CCAATGTGGG TAAATCGACC ATCATCAATA CGCTGGCTGG ACGTGTGATT
GCCAAAACCG GCAACGAGCC TGCGGTCACC AAGGCACAGC AGCGCATCAA TCTCAAAAAC
GGTATTGTAC TGTCAGATAC ACCGGGCATT CTGTGGCCCA AGGTGGACAA CGAAGCCAGC
AGCTATCGTC TGGCCGTGAC CGGCGCCATC AAAGACACCG CCATGGAATA TGAAGACGTA
GCGCTCTTTG CCGCAGCTTT TTTTCGCGAT GCTTATCCTG CTGAGCTGAA AGAACGTTAT
AAGCTCGATG AACTGTCCGA TGACGATGTG GCATTGCTGG AAGACATTGG CCGCAAGCGA
GGGGCGCTGC GAAGCGGTGG TTATGTGGAT CTGCACAAAG CCGCCGAGCT GCTGCTGCAC
GAATTCCGCA GTGGCAAACT GGGGCTGCTG AGCCTGGAAA CACCGGAAAT GGCTGAAATC
GAAAAAGCCG AAGTGGAGCG GATCCTCGCA GAGAAAGAAG CCCTGCGTCA GGAGAAACTG
GCCGCCGAAA AGCTGCGCCG TTCCGGTAAG CGCCACAATA ACTGA
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| Protein sequence | MAIQWYPGHM HKAQKEIAEA MPQVDLVIEV LDARIPYSSE NPMVAKLRGD KPCIKLLNKC
DLADPAITEA WIAHLEKEQG VKAMAVTTLQ PGHLKTVIPE LVRKLVPERD RADKDIRTMI
MGIPNVGKST IINTLAGRVI AKTGNEPAVT KAQQRINLKN GIVLSDTPGI LWPKVDNEAS
SYRLAVTGAI KDTAMEYEDV ALFAAAFFRD AYPAELKERY KLDELSDDDV ALLEDIGRKR
GALRSGGYVD LHKAAELLLH EFRSGKLGLL SLETPEMAEI EKAEVERILA EKEALRQEKL
AAEKLRRSGK RHNN
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