| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1988 |
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| Symbol | |
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| ID | 4604238 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2414958 |
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| End bp | 2415950 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639781365 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_927863 |
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| Protein GI | 119775123 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00771455 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0114075 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCATCG TTTTCACCAG ATGTTTTGCC ATGAATAAAG AAACAGTTCC AACCCAGGTT
CAATTGATCA GCATTGATGA AGATGGTGCC GGTCAGCGTA TTGATAATTT CCTGCTCGCC
AAGCTCAAGG GCGTACCCAA GAGCATGATC TATCGCATCG TCCGTAAGGG CGAGGTGAGG
GTTAACAAGA AGCGGATTAA GCCAGAATAC AAGCTCGCAG CGGGCGATGA GGTGCGTGTA
CCGCCGGTGC GCGTAGCCGA AAAAGATTAT CGTACAGCGC CTTCTGCCAA CCTCAATCGA
GTTGCCCAAC TTGAAGACCG TATTCTGTTC GAAGATAAGC AGATTATTGT GCTGAACAAA
CCGGCAGGTA TTGCCGTACA TGGTGGCAGT GGGGTGGACT ATGGTGTGAT TGAGTCGCTT
AGAAGCCTGC GACCCACCTG TAAGTTTCTG GAACTGGTAC ATCGTCTCGA TCGTGATACC
AGCGGTGTGC TGCTGATAGC CAAAAAGCGG ATGGCCCTGA GGCACCTGCA CGATCAGCTC
CGAAATAAGC AGATGCAAAA GGTGTATCAG GCGCTGGTGC GCGGCCAGTG GCAGGAGCAT
GACAGGGTAG TTAAAGCACC GCTGCTTAAA ATCACCCTCA AATCCGGCGA GCGCATAGTG
CGGGTGAACA GCGAAGGCAA ACCCAGCGAA ACCCGTTTCC GGGTGCTGCG TCGCTTTGAC
GAAGCAAGCC TGGTGGAAGC AAGCCCGGTG ACAGGTCGCA CCCATCAAAT TCGTGTGCAT
TGCCAGTACC AGGGGCATCC TATTGCCTGT GATGATAAAT ACAGTGAGCA AAAATTTGAT
GACGCCATGC GGGCCAAGGG ACTGCAGCGT TTGTTTTTGC ATGCAGCGCA ACTCACCTTT
ACCCATCCGG AGTCTGAAAC CCAGATGACG GTTCAGGCAC CACTGGACGG CGATTTAACG
GCCGTGCTGG ATGCGCTGGA GCAAAAAGGC TGA
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| Protein sequence | MRIVFTRCFA MNKETVPTQV QLISIDEDGA GQRIDNFLLA KLKGVPKSMI YRIVRKGEVR
VNKKRIKPEY KLAAGDEVRV PPVRVAEKDY RTAPSANLNR VAQLEDRILF EDKQIIVLNK
PAGIAVHGGS GVDYGVIESL RSLRPTCKFL ELVHRLDRDT SGVLLIAKKR MALRHLHDQL
RNKQMQKVYQ ALVRGQWQEH DRVVKAPLLK ITLKSGERIV RVNSEGKPSE TRFRVLRRFD
EASLVEASPV TGRTHQIRVH CQYQGHPIAC DDKYSEQKFD DAMRAKGLQR LFLHAAQLTF
THPESETQMT VQAPLDGDLT AVLDALEQKG
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